| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctttcgcc | 8 | ||
| MIMAT0026553 | hcmv-miR-US5-2-5p | 1 | ........ | 8 | 100 |
| MIMAT0028728 | mdo-miR-7358-5p | 8 | ......._ | 2 | 87 |
| MIMAT0023101 | tur-miR-5736a-3p | 1 | _....... | 7 | 87 |
| MIMAT0018694 | tca-miR-3832-5p | 8 | _....... | 2 | 87 |
| MIMAT0020820 | dme-miR-286-5p | 8 | .a...... | 1 | 87 |
| MIMAT0036957 | oha-miR-9-4-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036953 | oha-miR-9-1-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035610 | dvi-miR-996-5p | 6 | __...... | 1 | 75 |
| MIMAT0035230 | dme-miR-9383-3p | 1 | __...... | 6 | 75 |
| MIMAT0033956 | esi-miR8621 | 3 | __...... | 8 | 75 |
| MIMAT0033759 | pxy-miR-8520-3p | 2 | __...... | 7 | 75 |
| MIMAT0033684 | sma-miR-8481-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032798 | cel-miR-8192-3p | 6 | ......__ | 1 | 75 |
| MIMAT0031830 | cpa-miR8137 | 1 | __...... | 6 | 75 |
| MIMAT0027477 | hsa-miR-6788-3p | 1 | __...... | 6 | 75 |
| MIMAT0021566 | asu-miR-5353-5p | 7 | __...... | 2 | 75 |
| MIMAT0020486 | bfl-miR-4895 | 7 | _......_ | 2 | 75 |
| MIMAT0018603 | ame-miR-3734 | 1 | _......_ | 6 | 75 |
| MIMAT0017789 | esi-miR3468-5p | 8 | _......_ | 3 | 75 |
| MIMAT0017579 | aly-miR399e-5p | 7 | __...... | 2 | 75 |
| MIMAT0017577 | aly-miR399d-5p | 7 | __...... | 2 | 75 |
| MIMAT0015370 | aae-miR-315-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015354 | zma-miR398a-5p | 8 | __...... | 3 | 75 |
| MIMAT0013473 | mtr-miR2666 | 6 | ......__ | 1 | 75 |
| MIMAT0013344 | mtr-miR2624 | 6 | ......__ | 1 | 75 |
| MIMAT0011620 | crm-miR-80-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011275 | sme-miR-2174 | 2 | _......_ | 7 | 75 |
| MIMAT0009818 | nve-miR-2047-5p | 1 | __...... | 6 | 75 |
| MIMAT0009759 | nve-miR-2025-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019156 | sko-miR-96-3p | 6 | ......__ | 1 | 75 |
| MIMAT0006771 | cel-miR-1829c-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007489 | gga-miR-1621-3p | 3 | __...... | 8 | 75 |
| MIMAT0017209 | mmu-miR-541-3p | 7 | __...... | 2 | 75 |
| MIMAT0020841 | dme-miR-315-3p | 1 | ......__ | 6 | 75 |
| MIMAT0000052 | cel-miR-80-5p | 3 | ......__ | 8 | 75 |
