| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cttttttg | 8 | ||
| MIMAT0034742 | eca-miR-3613 | 8 | _....... | 2 | 87 |
| MIMAT0034165 | gra-miR8744 | 8 | _....... | 2 | 87 |
| MIMAT0033689 | sma-miR-8484-5p | 1 | _....... | 7 | 87 |
| MIMAT0026310 | ccr-miR-722 | 1 | _....... | 7 | 87 |
| MIMAT0027803 | mmu-miR-6951-3p | 1 | ......._ | 7 | 87 |
| MIMAT0025560 | bta-miR-2284aa | 7 | ......._ | 1 | 87 |
| MIMAT0025559 | bta-miR-2284z | 7 | ......._ | 1 | 87 |
| MIMAT0017991 | hsa-miR-3613-3p | 8 | _....... | 2 | 87 |
| MIMAT0016797 | cin-miR-4182-3p | 8 | _....... | 2 | 87 |
| MIMAT0016692 | cin-miR-4105-5p | 8 | _....... | 2 | 87 |
| MIMAT0016447 | cin-miR-4001b-1-3p | 1 | _....... | 7 | 87 |
| MIMAT0003748 | dre-miR-722 | 1 | _....... | 7 | 87 |
| MIMAT0031582 | bbe-miR-129a-5p | 1 | .c...... | 8 | 87 |
| MIMAT0010008 | bfl-miR-129a-5p | 1 | .c...... | 8 | 87 |
| MIMAT0036949 | oha-miR-737-5p | 1 | _......_ | 6 | 75 |
| MIMAT0036949 | oha-miR-737-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036683 | oha-miR-129b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036683 | oha-miR-129b-5p | 2 | __...... | 7 | 75 |
| MIMAT0036680 | oha-miR-129a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036680 | oha-miR-129a-5p | 2 | __...... | 7 | 75 |
| MIMAT0036506 | tch-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036506 | tch-miR-129-5p | 2 | __...... | 7 | 75 |
| MIMAT0035936 | chi-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035936 | chi-miR-129-5p | 2 | __...... | 7 | 75 |
| MIMAT0035704 | hsa-miR-548bb-3p | 6 | __...... | 1 | 75 |
| MIMAT0035470 | sly-miR9476-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035407 | nve-miR-9446 | 1 | _......_ | 6 | 75 |
| MIMAT0035105 | efu-miR-129b | 1 | ......__ | 6 | 75 |
| MIMAT0035105 | efu-miR-129b | 2 | __...... | 7 | 75 |
| MIMAT0034522 | eca-miR-8985 | 3 | ......__ | 8 | 75 |
| MIMAT0034480 | eca-miR-8951 | 1 | __...... | 6 | 75 |
| MIMAT0034292 | cfa-miR-8802 | 1 | __...... | 6 | 75 |
| MIMAT0034029 | gra-miR8659b | 3 | _......_ | 8 | 75 |
| MIMAT0034028 | gra-miR8659a | 3 | _......_ | 8 | 75 |
| MIMAT0033500 | str-miR-8402-5p | 7 | __...... | 2 | 75 |
| MIMAT0033418 | str-miR-8381-5p | 6 | __...... | 1 | 75 |
| MIMAT0032686 | ssa-miR-737-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032686 | ssa-miR-737-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032318 | ssa-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0032318 | ssa-miR-129-5p | 2 | __...... | 7 | 75 |
| MIMAT0031625 | bbe-miR-2063-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030913 | stu-miR8016 | 2 | __...... | 7 | 75 |
| MIMAT0030904 | stu-miR5303f | 2 | __...... | 7 | 75 |
| MIMAT0030621 | prd-miR-7904-3p | 7 | __...... | 2 | 75 |
| MIMAT0032241 | rgl-miR7800 | 3 | __...... | 8 | 75 |
| MIMAT0030351 | hhi-miR-129a | 1 | ......__ | 6 | 75 |
| MIMAT0030351 | hhi-miR-129a | 2 | __...... | 7 | 75 |
| MIMAT0030349 | hhi-miR-129b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0030349 | hhi-miR-129b-5p | 2 | __...... | 7 | 75 |
| MIMAT0031057 | bta-miR-2285af | 8 | __...... | 3 | 75 |
| MIMAT0029862 | mmu-miR-129b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0029862 | mmu-miR-129b-5p | 3 | __...... | 8 | 75 |
| MIMAT0029525 | ipu-miR-737 | 2 | _......_ | 7 | 75 |
| MIMAT0029525 | ipu-miR-737 | 3 | _......_ | 8 | 75 |
| MIMAT0029403 | ipu-miR-129 | 1 | ......__ | 6 | 75 |
| MIMAT0029403 | ipu-miR-129 | 2 | __...... | 7 | 75 |
| MIMAT0028713 | mdo-miR-7350-3p | 1 | __...... | 6 | 75 |
| MIMAT0028257 | mml-miR-548h-3p | 6 | __...... | 1 | 75 |
| MIMAT0028255 | mml-miR-548g-3p | 7 | __...... | 2 | 75 |
| MIMAT0026446 | sbi-miR6232b-5p | 1 | __...... | 6 | 75 |
| MIMAT0026209 | ccr-miR-129 | 1 | ......__ | 6 | 75 |
| MIMAT0026209 | ccr-miR-129 | 2 | __...... | 7 | 75 |
| MIMAT0028136 | mmu-miR-7119-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028130 | mmu-miR-7116-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028130 | mmu-miR-7116-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028063 | mmu-miR-7078-3p | 3 | ......__ | 8 | 75 |
| MIMAT0024383 | ppy-miR-4484 | 6 | ......__ | 1 | 75 |
| MIMAT0024378 | ppy-miR-548f | 6 | __...... | 1 | 75 |
| MIMAT0024307 | ggo-miR-4484 | 7 | ......__ | 2 | 75 |
| MIMAT0024288 | ggo-miR-548d | 6 | __...... | 1 | 75 |
| MIMAT0024260 | ggo-miR-548b | 6 | __...... | 1 | 75 |
| MIMAT0023751 | cgr-miR-129 | 1 | ......__ | 6 | 75 |
| MIMAT0023751 | cgr-miR-129 | 2 | __...... | 7 | 75 |
| MIMAT0022827 | sha-miR-129 | 1 | ......__ | 6 | 75 |
| MIMAT0022827 | sha-miR-129 | 2 | __...... | 7 | 75 |
| MIMAT0022264 | hsa-miR-548aq-3p | 6 | __...... | 1 | 75 |
| MIMAT0022116 | pti-miR5483 | 2 | _......_ | 7 | 75 |
| MIMAT0022116 | pti-miR5483 | 3 | _......_ | 8 | 75 |
| MIMAT0021736 | aca-miR-129b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0021736 | aca-miR-129b-5p | 2 | __...... | 7 | 75 |
| MIMAT0021734 | aca-miR-129a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0021734 | aca-miR-129a-5p | 2 | __...... | 7 | 75 |
| MIMAT0020767 | sly-miR5303 | 1 | __...... | 6 | 75 |
| MIMAT0021109 | osa-miR5157b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021107 | osa-miR5157a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020586 | ssc-miR-129b | 1 | ......__ | 6 | 75 |
| MIMAT0020586 | ssc-miR-129b | 2 | __...... | 7 | 75 |
| MIMAT0021066 | gma-miR5039 | 3 | ......__ | 8 | 75 |
| MIMAT0020168 | dme-miR-4953-3p | 1 | _......_ | 6 | 75 |
| MIMAT0020504 | dme-miR-4911-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019450 | pma-miR-129a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0019450 | pma-miR-129a-5p | 2 | __...... | 7 | 75 |
| MIMAT0019076 | hsa-miR-548am-3p | 6 | __...... | 1 | 75 |
| MIMAT0020957 | hsa-miR-548ah-3p | 6 | __...... | 1 | 75 |
| MIMAT0018954 | hsa-miR-548ae-3p | 6 | __...... | 1 | 75 |
| MIMAT0018938 | hsa-miR-548ac | 6 | __...... | 1 | 75 |
| MIMAT0018446 | hsa-miR-548z | 6 | __...... | 1 | 75 |
| MIMAT0018231 | gma-miR4343a | 6 | _......_ | 1 | 75 |
| MIMAT0018763 | tca-miR-3853-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018763 | tca-miR-3853-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017927 | aly-miR4238 | 1 | __...... | 6 | 75 |
| MIMAT0016759 | cin-miR-4155-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016965 | cin-miR-4000b-2-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015751 | ppy-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0015751 | ppy-miR-129-5p | 2 | __...... | 7 | 75 |
| MIMAT0017705 | aly-miR3437-5p | 6 | _......_ | 1 | 75 |
| MIMAT0014625 | tgu-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0014625 | tgu-miR-129-5p | 2 | __...... | 7 | 75 |
| MIMAT0032108 | ssc-miR-129a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0032108 | ssc-miR-129a-5p | 2 | __...... | 7 | 75 |
| MIMAT0013045 | eca-miR-129b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0013045 | eca-miR-129b-5p | 2 | __...... | 7 | 75 |
| MIMAT0012932 | eca-miR-129a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0012932 | eca-miR-129a-5p | 2 | __...... | 7 | 75 |
| MIMAT0015305 | bmo-miR-2778a-2-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015305 | bmo-miR-2778a-2-5p | 3 | _......_ | 8 | 75 |
| MIMAT0013675 | bmo-miR-2778b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013675 | bmo-miR-2778b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0013673 | bmo-miR-2778d-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013673 | bmo-miR-2778d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0013666 | bmo-miR-2778c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013666 | bmo-miR-2778c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0013664 | bmo-miR-2778a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013664 | bmo-miR-2778a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0013633 | bmo-miR-2760-3p | 1 | __...... | 6 | 75 |
| MIMAT0012492 | dsi-miR-992-3p | 3 | ......__ | 8 | 75 |
| MIMAT0012384 | dps-miR-2561-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012340 | dps-miR-2542-5p | 3 | __...... | 8 | 75 |
| MIMAT0012295 | dps-miR-2510 | 8 | ......__ | 3 | 75 |
| MIMAT0011988 | bta-miR-2421 | 3 | _......_ | 8 | 75 |
| MIMAT0011937 | bta-miR-2284v | 6 | ......__ | 1 | 75 |
| MIMAT0011926 | bta-miR-2284c | 6 | ......__ | 1 | 75 |
| MIMAT0011903 | bta-miR-2365 | 3 | __...... | 8 | 75 |
| MIMAT0011846 | bta-miR-2284n | 6 | ......__ | 1 | 75 |
| MIMAT0011836 | bta-miR-2284d | 6 | ......__ | 1 | 75 |
| MIMAT0011422 | sme-miR-2200-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009760 | nve-miR-2025-3p | 1 | _......_ | 6 | 75 |
| MIMAT0009221 | bta-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0009221 | bta-miR-129-5p | 2 | __...... | 7 | 75 |
| MIMAT0009220 | bta-miR-129 | 1 | ......__ | 6 | 75 |
| MIMAT0009220 | bta-miR-129 | 2 | __...... | 7 | 75 |
| MIMAT0008220 | ptr-miR-548c | 6 | __...... | 1 | 75 |
| MIMAT0008010 | ptr-miR-129 | 1 | ......__ | 6 | 75 |
| MIMAT0008010 | ptr-miR-129 | 2 | __...... | 7 | 75 |
| MIMAT0006623 | cfa-miR-129 | 1 | ......__ | 6 | 75 |
| MIMAT0006623 | cfa-miR-129 | 2 | __...... | 7 | 75 |
| MIMAT0006422 | mml-miR-553 | 6 | ......__ | 1 | 75 |
| MIMAT0006414 | mml-miR-548d-3p | 6 | __...... | 1 | 75 |
| MIMAT0006413 | mml-miR-548d-5p | 8 | __...... | 3 | 75 |
| MIMAT0006411 | mml-miR-548b | 6 | __...... | 1 | 75 |
| MIMAT0006185 | mml-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0006185 | mml-miR-129-5p | 2 | __...... | 7 | 75 |
| MIMAT0006888 | oan-miR-1422f-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006801 | oan-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0006801 | oan-miR-129-5p | 2 | __...... | 7 | 75 |
| MIMAT0022723 | hsa-miR-548h-3p | 6 | __...... | 1 | 75 |
| MIMAT0026737 | hsa-miR-548j-3p | 6 | __...... | 1 | 75 |
| MIMAT0004105 | mdo-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0004105 | mdo-miR-129-5p | 2 | __...... | 7 | 75 |
| MIMAT0003590 | xtr-miR-129 | 1 | ......__ | 6 | 75 |
| MIMAT0003590 | xtr-miR-129 | 2 | __...... | 7 | 75 |
| MIMAT0003771 | dre-miR-740 | 8 | ......__ | 3 | 75 |
| MIMAT0032013 | dre-miR-737-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032013 | dre-miR-737-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003323 | hsa-miR-548d-3p | 6 | __...... | 1 | 75 |
| MIMAT0003285 | hsa-miR-548c-3p | 6 | __...... | 1 | 75 |
| MIMAT0003036 | tni-miR-129 | 1 | ......__ | 6 | 75 |
| MIMAT0003036 | tni-miR-129 | 2 | __...... | 7 | 75 |
| MIMAT0003035 | fru-miR-129 | 1 | ......__ | 6 | 75 |
| MIMAT0003035 | fru-miR-129 | 2 | __...... | 7 | 75 |
| MIMAT0001825 | dre-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001825 | dre-miR-129-5p | 2 | __...... | 7 | 75 |
| MIMAT0001548 | cfa-miR-450a | 1 | __...... | 6 | 75 |
| MIMAT0000600 | rno-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000600 | rno-miR-129-5p | 2 | __...... | 7 | 75 |
| MIMAT0000242 | hsa-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000242 | hsa-miR-129-5p | 2 | __...... | 7 | 75 |
| MIMAT0000209 | mmu-miR-129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000209 | mmu-miR-129-5p | 2 | __...... | 7 | 75 |
