| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaaaatg | 7 | ||
| MIMAT0035426 | nve-miR-9467 | 7 | ....... | 1 | 100 |
| MIMAT0025025 | sma-miR-124a-5p | 8 | ....... | 2 | 100 |
| MIMAT0027320 | ppe-miR6288a | 1 | ....... | 7 | 100 |
| MIMAT0024731 | nta-miR6145a | 7 | ....... | 1 | 100 |
| MIMAT0021622 | gma-miR5380b | 1 | ....... | 7 | 100 |
| MIMAT0021621 | gma-miR5380a | 1 | ....... | 7 | 100 |
| MIMAT0018083 | hsa-miR-3662 | 1 | ....... | 7 | 100 |
| MIMAT0016262 | sja-miR-124-5p | 8 | ....... | 2 | 100 |
| MIMAT0026740 | hsa-miR-1250-3p | 8 | ....... | 2 | 100 |
| MIMAT0037019 | ssc-miR-9801-5p | 6 | _...... | 1 | 85 |
| MIMAT0036739 | oha-miR-153-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0036737 | oha-miR-153-1-5p | 8 | _...... | 3 | 85 |
| MIMAT0036438 | ggo-miR-522-3p | 1 | _...... | 6 | 85 |
| MIMAT0034559 | eca-miR-9018 | 6 | ......_ | 1 | 85 |
| MIMAT0033888 | atr-miR8599 | 3 | _...... | 8 | 85 |
| MIMAT0033832 | atr-miR8617 | 7 | _...... | 2 | 85 |
| MIMAT0033757 | pxy-miR-8519 | 1 | _...... | 6 | 85 |
| MIMAT0033574 | sma-miR-8435-5p | 2 | _...... | 7 | 85 |
| MIMAT0033540 | sma-miR-8418-5p | 7 | _...... | 2 | 85 |
| MIMAT0032589 | ssa-miR-29b-4-5p | 8 | _...... | 3 | 85 |
| MIMAT0032390 | ssa-miR-153b-5p | 7 | _...... | 2 | 85 |
| MIMAT0032387 | ssa-miR-153a-5p | 8 | _...... | 3 | 85 |
| MIMAT0031684 | bbe-miR-4863-3p | 8 | _...... | 3 | 85 |
| MIMAT0031243 | stu-miR5303h | 8 | _...... | 3 | 85 |
| MIMAT0030962 | stu-miR8047 | 7 | _...... | 2 | 85 |
| MIMAT0030918 | stu-miR7990b | 8 | ......_ | 3 | 85 |
| MIMAT0031200 | stu-miR8001b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030278 | bdi-miR7765-5p | 6 | _...... | 1 | 85 |
| MIMAT0030245 | bdi-miR7752-3p | 1 | _...... | 6 | 85 |
| MIMAT0029550 | ipu-miR-7554 | 7 | _...... | 2 | 85 |
| MIMAT0029360 | lja-miR7535 | 3 | ......_ | 8 | 85 |
| MIMAT0031116 | oan-miR-153-2-5p | 7 | _...... | 2 | 85 |
| MIMAT0028927 | mdo-miR-7398u-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028707 | mdo-miR-7347-3p | 6 | _...... | 1 | 85 |
| MIMAT0028270 | mml-miR-7168-5p | 6 | _...... | 1 | 85 |
| MIMAT0024926 | gma-miR1515b | 7 | _...... | 2 | 85 |
| MIMAT0024762 | nta-miR5303b | 1 | _...... | 6 | 85 |
| MIMAT0024761 | nta-miR5303a | 1 | _...... | 6 | 85 |
| MIMAT0027258 | pgi-miR6137b | 3 | ......_ | 8 | 85 |
| MIMAT0027257 | pgi-miR6137a | 3 | ......_ | 8 | 85 |
| MIMAT0023554 | ame-miR-6006-3p | 6 | ......_ | 1 | 85 |
| MIMAT0023515 | spu-miR-5993 | 3 | _...... | 8 | 85 |
| MIMAT0023457 | hco-miR-5954 | 8 | _...... | 3 | 85 |
| MIMAT0023377 | hco-miR-277 | 1 | _...... | 6 | 85 |
| MIMAT0023019 | bra-miR5721 | 2 | _...... | 7 | 85 |
| MIMAT0022159 | osa-miR5524 | 3 | ......_ | 8 | 85 |
| MIMAT0022105 | pti-miR5472 | 1 | _...... | 6 | 85 |
| MIMAT0021787 | aca-miR-153-5p | 7 | _...... | 2 | 85 |
| MIMAT0021620 | gma-miR5379 | 3 | ......_ | 8 | 85 |
| MIMAT0020275 | emu-miR-4989 | 1 | _...... | 6 | 85 |
| MIMAT0020250 | egr-miR-4989 | 1 | _...... | 6 | 85 |
| MIMAT0020192 | dme-miR-4967-5p | 8 | _...... | 3 | 85 |
| MIMAT0020096 | bfl-miR-4863-3p | 8 | _...... | 3 | 85 |
| MIMAT0019793 | hsa-miR-4698 | 3 | _...... | 8 | 85 |
| MIMAT0019746 | hsa-miR-4668-3p | 1 | ......_ | 6 | 85 |
| MIMAT0019483 | pma-miR-153-5p | 8 | _...... | 3 | 85 |
| MIMAT0018489 | csi-miR1515 | 7 | _...... | 2 | 85 |
| MIMAT0018276 | gma-miR4352b | 2 | _...... | 7 | 85 |
| MIMAT0018906 | tca-miR-3901-5p | 6 | _...... | 1 | 85 |
| MIMAT0018837 | tca-miR-3872-3p | 8 | _...... | 3 | 85 |
| MIMAT0018671 | tca-miR-3822-3p | 8 | ......_ | 3 | 85 |
| MIMAT0018065 | hsa-miR-3646 | 1 | _...... | 6 | 85 |
| MIMAT0018021 | vvi-miR3629a-5p | 8 | _...... | 3 | 85 |
| MIMAT0017939 | aly-miR4248c | 7 | _...... | 2 | 85 |
| MIMAT0017938 | aly-miR4248b | 7 | _...... | 2 | 85 |
| MIMAT0017937 | aly-miR4248a | 7 | _...... | 2 | 85 |
| MIMAT0016759 | cin-miR-4155-5p | 6 | _...... | 1 | 85 |
| MIMAT0016661 | cin-miR-4086-3p | 6 | _...... | 1 | 85 |
| MIMAT0016633 | cin-miR-4072-3p | 1 | _...... | 6 | 85 |
| MIMAT0015978 | ppy-miR-522 | 1 | _...... | 6 | 85 |
| MIMAT0031022 | tgu-miR-153-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0026997 | tgu-miR-153-1-5p | 8 | _...... | 3 | 85 |
| MIMAT0031108 | mdo-miR-153-1-5p | 7 | _...... | 2 | 85 |
| MIMAT0026931 | mdo-miR-153-2-5p | 7 | _...... | 2 | 85 |
| MIMAT0013718 | bmo-miR-2810 | 8 | ......_ | 3 | 85 |
| MIMAT0013285 | mtr-miR2595 | 8 | _...... | 3 | 85 |
| MIMAT0011791 | dme-miR-2283-5p | 1 | ......_ | 6 | 85 |
| MIMAT0011171 | pvu-miR1514a | 8 | _...... | 3 | 85 |
| MIMAT0010118 | ame-miR-985 | 1 | _...... | 6 | 85 |
| MIMAT0019162 | spu-miR-153-5p | 7 | _...... | 2 | 85 |
| MIMAT0008206 | ptr-miR-522 | 1 | _...... | 6 | 85 |
| MIMAT0006382 | mml-miR-518e | 1 | _...... | 6 | 85 |
| MIMAT0007374 | gma-miR1515a | 7 | _...... | 2 | 85 |
| MIMAT0007373 | gma-miR1514b-5p | 8 | _...... | 3 | 85 |
| MIMAT0007372 | gma-miR1514a-5p | 8 | _...... | 3 | 85 |
| MIMAT0015261 | cin-miR-153-5p | 8 | _...... | 3 | 85 |
| MIMAT0007315 | oan-miR-1422p-3p | 1 | _...... | 6 | 85 |
| MIMAT0007100 | oan-miR-1422m-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007004 | oan-miR-153-1-5p | 8 | _...... | 3 | 85 |
| MIMAT0006888 | oan-miR-1422f-3p | 3 | _...... | 8 | 85 |
| MIMAT0006880 | oan-miR-1422a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004009 | sme-miR-277b-3p | 1 | _...... | 6 | 85 |
| MIMAT0012090 | sme-miR-1a-5p | 8 | _...... | 3 | 85 |
| MIMAT0003923 | mdv1-miR-M3-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003474 | mmu-miR-694 | 3 | ......_ | 8 | 85 |
| MIMAT0002868 | hsa-miR-522-3p | 1 | _...... | 6 | 85 |
| MIMAT0031060 | mml-miR-153-2-5p | 7 | _...... | 2 | 85 |
| MIMAT0026569 | mml-miR-153-1-5p | 7 | _...... | 2 | 85 |
| MIMAT0031979 | dre-miR-153c-5p | 8 | _...... | 3 | 85 |
| MIMAT0031978 | dre-miR-153a-5p | 8 | _...... | 3 | 85 |
| MIMAT0031977 | dre-miR-153b-5p | 8 | _...... | 3 | 85 |
| MIMAT0001298 | cbr-miR-357 | 1 | _...... | 6 | 85 |
| MIMAT0026502 | gga-miR-153-5p | 7 | _...... | 2 | 85 |
| MIMAT0017135 | rno-miR-153-5p | 8 | _...... | 3 | 85 |
| MIMAT0026480 | hsa-miR-153-5p | 7 | _...... | 2 | 85 |
| MIMAT0009198 | hsa-miR-224-3p | 1 | _...... | 6 | 85 |
