| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaaactg | 7 | ||
| MIMAT0024284 | ggo-miR-4738 | 2 | ....... | 8 | 100 |
| MIMAT0019867 | hsa-miR-4738-3p | 2 | ....... | 8 | 100 |
| MIMAT0001569 | mghv-miR-M1-6-3p | 2 | ....... | 8 | 100 |
| MIMAT0001002 | ath-miR401 | 2 | ....... | 8 | 100 |
| MIMAT0035534 | bdi-miR2275b | 8 | _...... | 3 | 85 |
| MIMAT0035214 | dme-miR-9375-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033457 | str-miR-255-3p | 1 | _...... | 6 | 85 |
| MIMAT0033414 | str-miR-76-5p | 8 | ......_ | 3 | 85 |
| MIMAT0031412 | mmu-miR-8107 | 3 | ......_ | 8 | 85 |
| MIMAT0031219 | stu-miR319-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030761 | prd-miR-255-3p | 1 | _...... | 6 | 85 |
| MIMAT0030586 | prd-miR-7897-5p | 8 | _...... | 3 | 85 |
| MIMAT0030435 | bta-miR-2285aa | 2 | _...... | 7 | 85 |
| MIMAT0030434 | bta-miR-7859 | 3 | _...... | 8 | 85 |
| MIMAT0029922 | crm-miR-255 | 1 | _...... | 6 | 85 |
| MIMAT0029834 | mmu-miR-7664-5p | 6 | _...... | 1 | 85 |
| MIMAT0029805 | mmu-miR-7651-3p | 7 | _...... | 2 | 85 |
| MIMAT0029768 | cbn-miR-255 | 1 | _...... | 6 | 85 |
| MIMAT0028684 | mdo-miR-7338-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028545 | mdo-miR-7262b-3p | 1 | _...... | 6 | 85 |
| MIMAT0028179 | dev-miR-D8-3p | 8 | _...... | 3 | 85 |
| MIMAT0025820 | gga-miR-6710-3p | 1 | _...... | 6 | 85 |
| MIMAT0025457 | hsa-miR-548az-3p | 3 | _...... | 8 | 85 |
| MIMAT0024551 | cca-miR6112 | 8 | ......_ | 3 | 85 |
| MIMAT0024338 | mml-miR-1243-3p | 1 | _...... | 6 | 85 |
| MIMAT0024276 | ggo-miR-548e | 3 | _...... | 8 | 85 |
| MIMAT0024057 | ptr-miR-548e | 3 | _...... | 8 | 85 |
| MIMAT0023577 | tca-miR-6018-5p | 8 | ......_ | 3 | 85 |
| MIMAT0023522 | ath-miR5998b | 7 | _...... | 2 | 85 |
| MIMAT0023521 | ath-miR5998a | 7 | _...... | 2 | 85 |
| MIMAT0023411 | hco-miR-255 | 1 | _...... | 6 | 85 |
| MIMAT0023343 | hco-miR-5898-3p | 6 | _...... | 1 | 85 |
| MIMAT0023186 | gma-miR5781 | 3 | ......_ | 8 | 85 |
| MIMAT0022669 | ola-miR-145 | 8 | _...... | 3 | 85 |
| MIMAT0022304 | hsa-miR-548av-3p | 2 | _...... | 7 | 85 |
| MIMAT0022266 | hsa-miR-548ar-3p | 3 | _...... | 8 | 85 |
| MIMAT0021552 | asu-miR-5350a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0021352 | mtr-miR5286b | 3 | _...... | 8 | 85 |
| MIMAT0021016 | gma-miR4998 | 6 | ......_ | 1 | 85 |
| MIMAT0020028 | sko-miR-4823-3p | 8 | _...... | 3 | 85 |
| MIMAT0016926 | hsa-miR-4328 | 7 | _...... | 2 | 85 |
| MIMAT0016234 | ppy-miR-1537 | 2 | _...... | 7 | 85 |
| MIMAT0015600 | bmo-miR-3396 | 8 | _...... | 3 | 85 |
| MIMAT0014956 | mmu-miR-3112-3p | 6 | _...... | 1 | 85 |
| MIMAT0013830 | osa-miR1863c | 3 | ......_ | 8 | 85 |
| MIMAT0012211 | dme-miR-2498-3p | 1 | _...... | 6 | 85 |
| MIMAT0011888 | bta-miR-2352 | 1 | _...... | 6 | 85 |
| MIMAT0011797 | bta-miR-2285a | 3 | _...... | 8 | 85 |
| MIMAT0011772 | zma-miR2275c-3p | 8 | _...... | 3 | 85 |
| MIMAT0011770 | zma-miR2275b-3p | 8 | _...... | 3 | 85 |
| MIMAT0012148 | sme-miR-2157-3p | 6 | _...... | 1 | 85 |
| MIMAT0008221 | ptr-miR-548f | 3 | _...... | 8 | 85 |
| MIMAT0008218 | ptr-miR-548a | 3 | _...... | 8 | 85 |
| MIMAT0007766 | osa-miR1847.1 | 8 | _...... | 3 | 85 |
| MIMAT0015266 | cel-miR-1822-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007502 | gga-miR-1631 | 1 | _...... | 6 | 85 |
| MIMAT0007317 | oan-miR-1422q-3p | 3 | _...... | 8 | 85 |
| MIMAT0007093 | oan-miR-1422j-3p | 2 | _...... | 7 | 85 |
| MIMAT0006894 | oan-miR-1422i-3p | 2 | _...... | 7 | 85 |
| MIMAT0005912 | hsa-miR-548g-3p | 2 | _...... | 7 | 85 |
| MIMAT0005895 | hsa-miR-548f-3p | 3 | _...... | 8 | 85 |
| MIMAT0005874 | hsa-miR-548e-3p | 3 | _...... | 8 | 85 |
| MIMAT0004297 | cbr-miR-255 | 1 | _...... | 6 | 85 |
| MIMAT0004258 | ath-miR837-5p | 8 | _...... | 3 | 85 |
| MIMAT0012105 | sme-miR-61a-5p | 6 | _...... | 1 | 85 |
| MIMAT0003750 | dre-miR-723-5p | 8 | _...... | 3 | 85 |
| MIMAT0003251 | hsa-miR-548a-3p | 3 | _...... | 8 | 85 |
| MIMAT0001329 | osa-miR413 | 8 | ......_ | 3 | 85 |
| MIMAT0001321 | ath-miR413 | 8 | ......_ | 3 | 85 |
| MIMAT0020824 | dme-miR-303-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004216 | cel-miR-255-3p | 1 | _...... | 6 | 85 |
| MIMAT0020309 | cel-miR-49-5p | 8 | _...... | 3 | 85 |
