| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaaagcca | 8 | ||
| MIMAT0007340 | gga-miR-1462-5p | 8 | ........ | 1 | 100 |
| MIMAT0005333 | rno-miR-742-3p | 1 | ........ | 8 | 100 |
| MIMAT0004237 | mmu-miR-742-3p | 1 | ........ | 8 | 100 |
| MIMAT0032684 | ssa-miR-736-5p | 8 | ......._ | 2 | 87 |
| MIMAT0026422 | sbi-miR5568d-5p | 7 | _....... | 1 | 87 |
| MIMAT0019369 | pma-miR-1d | 7 | _....... | 1 | 87 |
| MIMAT0015451 | bmo-miR-3267a | 7 | _....... | 1 | 87 |
| MIMAT0019212 | hsa-miR-3160-5p | 7 | ......._ | 1 | 87 |
| MIMAT0014981 | hsa-miR-3119 | 7 | _....... | 1 | 87 |
| MIMAT0013588 | cte-miR-2719 | 7 | _....... | 1 | 87 |
| MIMAT0026756 | oan-miR-1351-3p | 8 | _....... | 2 | 87 |
| MIMAT0005243 | smo-miR1090 | 2 | ......._ | 8 | 87 |
| MIMAT0020326 | cel-miR-90-5p | 8 | ......._ | 2 | 87 |
| MIMAT0033844 | atr-miR8568 | 8 | .t...... | 1 | 87 |
| MIMAT0018569 | ame-miR-3790 | 1 | ......g. | 8 | 87 |
| MIMAT0036704 | oha-miR-135-5p | 8 | __...... | 3 | 75 |
| MIMAT0036595 | tch-miR-135a-5p | 8 | __...... | 3 | 75 |
| MIMAT0036518 | tch-miR-135b-5p | 8 | __...... | 3 | 75 |
| MIMAT0036455 | ptr-miR-518g-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036417 | ggo-miR-518f-3p | 1 | ......__ | 6 | 75 |
| MIMAT0035953 | chi-miR-135b-5p | 8 | __...... | 3 | 75 |
| MIMAT0035952 | chi-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0035558 | dvi-miR-1017-3p | 1 | ......__ | 6 | 75 |
| MIMAT0035493 | bdi-miR9486a | 8 | ......__ | 3 | 75 |
| MIMAT0035136 | efu-miR-30e | 6 | ......__ | 1 | 75 |
| MIMAT0034982 | efu-miR-9309 | 8 | __...... | 3 | 75 |
| MIMAT0034973 | efu-miR-30a | 6 | ......__ | 1 | 75 |
| MIMAT0034617 | eca-miR-9072 | 2 | _......_ | 7 | 75 |
| MIMAT0034567 | eca-miR-9025 | 6 | __...... | 1 | 75 |
| MIMAT0034506 | eca-miR-8969 | 8 | _......_ | 3 | 75 |
| MIMAT0034471 | eca-miR-8942 | 8 | _......_ | 3 | 75 |
| MIMAT0033438 | str-miR-124-5p | 7 | ......__ | 2 | 75 |
| MIMAT0033425 | str-miR-8383-3p | 8 | __...... | 3 | 75 |
| MIMAT0033304 | str-miR-7880b-1-5p | 6 | __...... | 1 | 75 |
| MIMAT0032981 | ppc-miR-8256-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032348 | ssa-miR-135c-5p | 8 | __...... | 3 | 75 |
| MIMAT0032344 | ssa-miR-135b-5p | 8 | __...... | 3 | 75 |
| MIMAT0032342 | ssa-miR-135a-5p | 8 | __...... | 3 | 75 |
| MIMAT0031589 | bbe-miR-135b-5p | 8 | __...... | 3 | 75 |
| MIMAT0031587 | bbe-miR-135a-5p | 8 | __...... | 3 | 75 |
| MIMAT0030754 | prd-miR-67-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030665 | prd-miR-7915-3p | 8 | __...... | 3 | 75 |
| MIMAT0030584 | prd-miR-7880b-5p | 6 | __...... | 1 | 75 |
| MIMAT0030267 | bdi-miR7760-3p | 6 | _......_ | 1 | 75 |
| MIMAT0029907 | mmu-miR-7688-3p | 8 | __...... | 3 | 75 |
| MIMAT0029811 | mmu-miR-7652-3p | 8 | __...... | 3 | 75 |
| MIMAT0029412 | ipu-miR-135c | 8 | __...... | 3 | 75 |
| MIMAT0029411 | ipu-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0029410 | ipu-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0029072 | gga-miR-7459-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028585 | mdo-miR-7298-3p | 6 | __...... | 1 | 75 |
| MIMAT0028201 | dev-miR-D24-3p | 8 | __...... | 3 | 75 |
| MIMAT0026216 | ccr-miR-135c | 8 | __...... | 3 | 75 |
| MIMAT0026172 | cme-miR169g | 1 | __...... | 6 | 75 |
| MIMAT0028089 | mmu-miR-7091-3p | 8 | __...... | 3 | 75 |
| MIMAT0027906 | mmu-miR-7002-5p | 7 | __...... | 2 | 75 |
| MIMAT0027531 | hsa-miR-6815-3p | 6 | __...... | 1 | 75 |
| MIMAT0025269 | ptc-miR169ag | 1 | __...... | 6 | 75 |
| MIMAT0025130 | mmu-miR-6384 | 6 | ......__ | 1 | 75 |
| MIMAT0024253 | ggo-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0023218 | gma-miR169s | 1 | __...... | 6 | 75 |
| MIMAT0022823 | sha-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0022657 | ola-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0022547 | ola-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0022445 | ath-miR5643b | 7 | _......_ | 2 | 75 |
| MIMAT0022404 | ath-miR5643a | 7 | _......_ | 2 | 75 |
| MIMAT0021750 | aca-miR-135-5p | 8 | __...... | 3 | 75 |
| MIMAT0021515 | asu-miR-279c-5p | 8 | __...... | 3 | 75 |
| MIMAT0021069 | gma-miR396f | 7 | ......__ | 2 | 75 |
| MIMAT0020396 | tcc-miR169f | 1 | __...... | 6 | 75 |
| MIMAT0019955 | hsa-miR-4786-3p | 3 | __...... | 8 | 75 |
| MIMAT0019465 | pma-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0019463 | pma-miR-135a-5p | 8 | __...... | 3 | 75 |
| MIMAT0018262 | gma-miR396d | 3 | ......__ | 8 | 75 |
| MIMAT0018218 | hvu-miR169 | 1 | __...... | 6 | 75 |
| MIMAT0016866 | hsa-miR-4315 | 8 | ......__ | 3 | 75 |
| MIMAT0017916 | aly-miR4228 | 1 | _......_ | 6 | 75 |
| MIMAT0016425 | cin-miR-132-5p | 8 | __...... | 3 | 75 |
| MIMAT0016409 | cin-miR-135-5p | 8 | __...... | 3 | 75 |
| MIMAT0015958 | ppy-miR-518f | 1 | ......__ | 6 | 75 |
| MIMAT0015952 | ppy-miR-518a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015758 | ppy-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0014911 | mmu-miR-3095-5p | 8 | ......__ | 3 | 75 |
| MIMAT0014864 | mmu-miR-3078-5p | 2 | _......_ | 7 | 75 |
| MIMAT0014560 | tgu-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0014559 | tgu-miR-135a-5p | 8 | __...... | 3 | 75 |
| MIMAT0014481 | tgu-miR-2971 | 2 | _......_ | 7 | 75 |
| MIMAT0014410 | cqu-miR-285-5p | 8 | __...... | 3 | 75 |
| MIMAT0013078 | eca-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0012952 | eca-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0012561 | aqc-miR168 | 6 | __...... | 1 | 75 |
| MIMAT0012503 | dsi-miR-978b | 2 | __...... | 7 | 75 |
| MIMAT0011850 | bta-miR-2322-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011620 | crm-miR-80-5p | 7 | ......__ | 2 | 75 |
| MIMAT0010194 | bfl-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0032104 | sma-bantam-5p | 7 | _......_ | 2 | 75 |
| MIMAT0009992 | bfl-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0009839 | cfa-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0009796 | nve-miR-2037-5p | 3 | _......_ | 8 | 75 |
| MIMAT0009759 | nve-miR-2025-5p | 7 | ......__ | 2 | 75 |
| MIMAT0009229 | bta-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0009228 | bta-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0008191 | ptr-miR-518f | 1 | ......__ | 6 | 75 |
| MIMAT0008186 | ptr-miR-518a | 1 | ......__ | 6 | 75 |
| MIMAT0008032 | ptr-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0007752 | gga-miR-762 | 8 | _......_ | 3 | 75 |
| MIMAT0010196 | cfa-miR-135a-5p | 8 | __...... | 3 | 75 |
| MIMAT0006552 | vvi-miR169v | 1 | __...... | 6 | 75 |
| MIMAT0006191 | mml-miR-135b-5p | 8 | __...... | 3 | 75 |
| MIMAT0007536 | gga-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0007476 | gga-miR-1610 | 6 | __...... | 1 | 75 |
| MIMAT0007357 | gma-miR169c | 1 | __...... | 6 | 75 |
| MIMAT0006870 | oan-miR-135b-5p | 8 | __...... | 3 | 75 |
| MIMAT0004466 | mdv2-miR-M22-3p | 8 | __...... | 3 | 75 |
| MIMAT0005030 | dme-miR-1017-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026727 | mtr-miR319b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0011069 | mtr-miR169f | 1 | __...... | 6 | 75 |
| MIMAT0011064 | mtr-miR169d-5p | 1 | __...... | 6 | 75 |
| MIMAT0004109 | mdo-miR-135b-5p | 8 | __...... | 3 | 75 |
| MIMAT0004108 | mdo-miR-135a-5p | 8 | __...... | 3 | 75 |
| MIMAT0012086 | sme-bantam-c-5p | 8 | _......_ | 3 | 75 |
| MIMAT0003937 | ath-miR778 | 6 | __...... | 1 | 75 |
| MIMAT0003598 | xtr-miR-135 | 8 | __...... | 3 | 75 |
| MIMAT0017246 | mmu-miR-677-3p | 2 | __...... | 7 | 75 |
| MIMAT0003348 | dre-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0022927 | osa-miR535-3p | 8 | ......__ | 3 | 75 |
| MIMAT0004325 | ppt-miR319d-5p.1 | 8 | ......__ | 3 | 75 |
| MIMAT0003052 | tni-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0003051 | fru-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0003032 | dre-miR-135b-5p | 8 | __...... | 3 | 75 |
| MIMAT0003031 | tni-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0003030 | fru-miR-135b | 8 | __...... | 3 | 75 |
| MIMAT0002863 | hsa-miR-518a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0002842 | hsa-miR-518f-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015757 | ppy-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0002253 | ggo-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0002252 | ptr-miR-135a | 8 | __...... | 3 | 75 |
| MIMAT0002251 | mml-miR-135a-5p | 8 | __...... | 3 | 75 |
| MIMAT0002250 | ppa-miR-135 | 8 | __...... | 3 | 75 |
| MIMAT0002249 | age-miR-135 | 8 | __...... | 3 | 75 |
| MIMAT0002248 | lla-miR-135 | 8 | __...... | 3 | 75 |
| MIMAT0002121 | ssc-miR-135 | 8 | __...... | 3 | 75 |
| MIMAT0001971 | ptc-miR169o | 1 | __...... | 6 | 75 |
| MIMAT0001833 | dre-miR-135c | 8 | __...... | 3 | 75 |
| MIMAT0001099 | gga-miR-135a-5p | 8 | __...... | 3 | 75 |
| MIMAT0000841 | rno-miR-135a-5p | 8 | __...... | 3 | 75 |
| MIMAT0000758 | hsa-miR-135b-5p | 8 | __...... | 3 | 75 |
| MIMAT0000612 | mmu-miR-135b-5p | 8 | __...... | 3 | 75 |
| MIMAT0000611 | rno-miR-135b-5p | 8 | __...... | 3 | 75 |
| MIMAT0000428 | hsa-miR-135a-5p | 8 | __...... | 3 | 75 |
| MIMAT0000147 | mmu-miR-135a-5p | 8 | __...... | 3 | 75 |
| MIMAT0000052 | cel-miR-80-5p | 7 | ......__ | 2 | 75 |
