| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaacgtg | 7 | ||
| MIMAT0013969 | bhv1-miR-B7 | 7 | ....... | 1 | 100 |
| MIMAT0005544 | mcmv-miR-M23-2-5p | 2 | ....... | 8 | 100 |
| MIMAT0034475 | eca-miR-8946 | 7 | _...... | 2 | 85 |
| MIMAT0033670 | sma-miR-8474-3p | 1 | ......_ | 6 | 85 |
| MIMAT0030834 | prd-miR-7966b-5p | 6 | _...... | 1 | 85 |
| MIMAT0030487 | prd-miR-7871-3p | 7 | _...... | 2 | 85 |
| MIMAT0030202 | bdi-miR7734-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027715 | mmu-miR-6907-3p | 1 | _...... | 6 | 85 |
| MIMAT0019644 | pma-miR-4610 | 1 | _...... | 6 | 85 |
| MIMAT0018263 | gma-miR1520j | 3 | ......_ | 8 | 85 |
| MIMAT0018257 | gma-miR1520i | 1 | _...... | 6 | 85 |
| MIMAT0016795 | cin-miR-4181-3p | 1 | ......_ | 6 | 85 |
| MIMAT0014441 | cqu-miR-1889-3p | 6 | _...... | 1 | 85 |
| MIMAT0014234 | aae-miR-1889-3p | 6 | _...... | 1 | 85 |
| MIMAT0011550 | crm-miR-52-3p | 6 | _...... | 1 | 85 |
| MIMAT0006385 | mml-miR-519b | 1 | _...... | 6 | 85 |
| MIMAT0026872 | mml-miR-424-3p | 3 | _...... | 8 | 85 |
| MIMAT0026851 | mml-miR-302a-5p | 3 | _...... | 8 | 85 |
| MIMAT0007713 | gga-miR-1798-5p | 1 | _...... | 6 | 85 |
| MIMAT0005386 | cre-miR1148.1 | 3 | _...... | 8 | 85 |
| MIMAT0002094 | ptc-miR478n | 2 | _...... | 7 | 85 |
| MIMAT0002093 | ptc-miR478s | 2 | _...... | 7 | 85 |
| MIMAT0002092 | ptc-miR478r | 2 | _...... | 7 | 85 |
| MIMAT0002091 | ptc-miR478q | 2 | _...... | 7 | 85 |
| MIMAT0002090 | ptc-miR478p | 2 | _...... | 7 | 85 |
| MIMAT0002089 | ptc-miR478o | 2 | _...... | 7 | 85 |
| MIMAT0002087 | ptc-miR478m | 2 | _...... | 7 | 85 |
| MIMAT0002086 | ptc-miR478l | 2 | _...... | 7 | 85 |
| MIMAT0002085 | ptc-miR478k | 2 | _...... | 7 | 85 |
| MIMAT0002084 | ptc-miR478j | 2 | _...... | 7 | 85 |
| MIMAT0002083 | ptc-miR478i | 2 | _...... | 7 | 85 |
| MIMAT0002082 | ptc-miR478h | 2 | _...... | 7 | 85 |
| MIMAT0020311 | cel-miR-52-3p | 6 | _...... | 1 | 85 |
