| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaagaag | 7 | ||
| MIMAT0032836 | cel-miR-8209-3p | 8 | ....... | 2 | 100 |
| MIMAT0019937 | hsa-miR-4778-3p | 8 | ....... | 2 | 100 |
| MIMAT0020967 | bcy-miR529 | 1 | ....... | 7 | 100 |
| MIMAT0020963 | bgy-miR529 | 1 | ....... | 7 | 100 |
| MIMAT0017620 | aly-miR835-3p | 2 | ....... | 8 | 100 |
| MIMAT0015065 | hsa-miR-3185 | 2 | ....... | 8 | 100 |
| MIMAT0012729 | iltv-miR-I5-3p | 2 | ....... | 8 | 100 |
| MIMAT0007868 | mmu-miR-1903 | 8 | ....... | 2 | 100 |
| MIMAT0036658 | oha-miR-103b-5p | 8 | _...... | 3 | 85 |
| MIMAT0036656 | oha-miR-103a-5p | 8 | _...... | 3 | 85 |
| MIMAT0036654 | oha-miR-107-5p | 8 | _...... | 3 | 85 |
| MIMAT0036381 | gma-miR9752 | 8 | _...... | 3 | 85 |
| MIMAT0036075 | chi-miR-22-5p | 8 | ......_ | 3 | 85 |
| MIMAT0035920 | chi-miR-1248-5p | 8 | _...... | 3 | 85 |
| MIMAT0035901 | chi-miR-103-5p | 8 | _...... | 3 | 85 |
| MIMAT0035791 | tae-miR9673-5p | 2 | _...... | 7 | 85 |
| MIMAT0034852 | efu-miR-9234c | 6 | ......_ | 1 | 85 |
| MIMAT0034687 | eca-miR-9136 | 3 | _...... | 8 | 85 |
| MIMAT0034627 | eca-miR-9082 | 6 | ......_ | 1 | 85 |
| MIMAT0033901 | atr-miR8610.1 | 8 | _...... | 3 | 85 |
| MIMAT0033456 | str-miR-255-5p | 3 | _...... | 8 | 85 |
| MIMAT0032546 | ssa-miR-22b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0032544 | ssa-miR-22a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0032355 | ssa-miR-138-4-3p | 8 | _...... | 3 | 85 |
| MIMAT0032290 | ssa-miR-107-5p | 8 | _...... | 3 | 85 |
| MIMAT0031201 | stu-miR8024a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030384 | ptc-miR7825 | 3 | ......_ | 8 | 85 |
| MIMAT0030334 | hhi-miR-7790 | 3 | ......_ | 8 | 85 |
| MIMAT0030108 | bdi-miR5181c-3p | 7 | _...... | 2 | 85 |
| MIMAT0029888 | mmu-miR-216c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0029013 | oan-miR-7431-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028867 | mdo-miR-7386o-3p | 2 | _...... | 7 | 85 |
| MIMAT0028863 | mdo-miR-7386m-3p | 2 | _...... | 7 | 85 |
| MIMAT0028849 | mdo-miR-7386k-3p | 2 | _...... | 7 | 85 |
| MIMAT0025823 | gga-miR-6713-3p | 1 | _...... | 6 | 85 |
| MIMAT0025470 | hsa-miR-6507-5p | 1 | ......_ | 6 | 85 |
| MIMAT0025426 | pol-miR-22-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027319 | ppe-miR6287 | 2 | _...... | 7 | 85 |
| MIMAT0024557 | cca-miR6108e-5p | 3 | _...... | 8 | 85 |
| MIMAT0024536 | cca-miR6103-3p | 2 | _...... | 7 | 85 |
| MIMAT0023856 | cgr-miR-22-5p | 8 | ......_ | 3 | 85 |
| MIMAT0023730 | cgr-miR-103-5p | 8 | _...... | 3 | 85 |
| MIMAT0022402 | ath-miR5641 | 3 | ......_ | 8 | 85 |
| MIMAT0022053 | aca-miR-5432 | 1 | _...... | 6 | 85 |
| MIMAT0021887 | aca-miR-22-5p | 8 | ......_ | 3 | 85 |
| MIMAT0021715 | aca-miR-103-5p | 8 | _...... | 3 | 85 |
| MIMAT0021713 | aca-miR-107-5p | 8 | _...... | 3 | 85 |
| MIMAT0021131 | hsa-miR-5197-3p | 1 | _...... | 6 | 85 |
| MIMAT0020554 | bdi-miR5056 | 3 | ......_ | 8 | 85 |
| MIMAT0020524 | ath-miR5020a | 3 | ......_ | 8 | 85 |
| MIMAT0019048 | hsa-miR-4511 | 1 | ......_ | 6 | 85 |
| MIMAT0018861 | tca-miR-3882-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018650 | tca-miR-3811d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0018539 | ame-miR-3765 | 1 | ......_ | 6 | 85 |
| MIMAT0018073 | hsa-miR-3653-3p | 3 | _...... | 8 | 85 |
| MIMAT0016769 | cin-miR-4162-3p | 1 | _...... | 6 | 85 |
| MIMAT0016715 | cin-miR-4123-5p | 8 | _...... | 3 | 85 |
| MIMAT0017848 | rno-miR-3568 | 8 | ......_ | 3 | 85 |
| MIMAT0016257 | sja-miR-36-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016173 | ppy-miR-1248 | 8 | _...... | 3 | 85 |
| MIMAT0016020 | ppy-miR-578 | 6 | _...... | 1 | 85 |
| MIMAT0015709 | ssc-miR-22-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017656 | aly-miR868-3p | 6 | _...... | 1 | 85 |
| MIMAT0017622 | aly-miR838-3p | 8 | ......_ | 3 | 85 |
| MIMAT0026985 | tgu-miR-103-5p | 8 | _...... | 3 | 85 |
| MIMAT0014059 | osa-miR2928 | 1 | _...... | 6 | 85 |
| MIMAT0013091 | eca-miR-1248 | 8 | _...... | 3 | 85 |
| MIMAT0012588 | aqc-miR477d | 8 | _...... | 3 | 85 |
| MIMAT0013481 | mtr-miR2670d | 2 | _...... | 7 | 85 |
| MIMAT0013480 | mtr-miR2670c | 2 | _...... | 7 | 85 |
| MIMAT0013479 | mtr-miR2670b | 2 | _...... | 7 | 85 |
| MIMAT0013478 | mtr-miR2670a | 2 | _...... | 7 | 85 |
| MIMAT0012350 | dps-miR-2545a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0012040 | bta-miR-1434-3p | 1 | ......_ | 6 | 85 |
| MIMAT0012139 | sme-miR-8b-5p | 7 | _...... | 2 | 85 |
| MIMAT0010150 | mcv-miR-M1-5p | 3 | ......_ | 8 | 85 |
| MIMAT0009972 | bta-miR-1248 | 8 | _...... | 3 | 85 |
| MIMAT0009915 | cfa-miR-578 | 6 | _...... | 1 | 85 |
| MIMAT0009756 | nve-miR-2023-3p | 2 | _...... | 7 | 85 |
| MIMAT0032075 | dvi-miR-2b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007974 | ptr-miR-1248 | 8 | _...... | 3 | 85 |
| MIMAT0006439 | mml-miR-578 | 6 | _...... | 1 | 85 |
| MIMAT0006070 | csa-miR-1497 | 3 | ......_ | 8 | 85 |
| MIMAT0006068 | cin-miR-1497-3p | 3 | ......_ | 8 | 85 |
| MIMAT0006057 | odi-miR-1497h | 3 | ......_ | 8 | 85 |
| MIMAT0006056 | odi-miR-1497g | 3 | ......_ | 8 | 85 |
| MIMAT0006055 | odi-miR-1497f | 3 | ......_ | 8 | 85 |
| MIMAT0006054 | odi-miR-1497e | 3 | ......_ | 8 | 85 |
| MIMAT0006053 | odi-miR-1497d | 3 | ......_ | 8 | 85 |
| MIMAT0006052 | odi-miR-1497c | 3 | ......_ | 8 | 85 |
| MIMAT0006051 | odi-miR-1497b | 3 | ......_ | 8 | 85 |
| MIMAT0006050 | odi-miR-1497a | 3 | ......_ | 8 | 85 |
| MIMAT0007287 | gga-miR-22-5p | 8 | ......_ | 3 | 85 |
| MIMAT0007118 | oan-miR-107-5p | 8 | _...... | 3 | 85 |
| MIMAT0006961 | oan-miR-22-5p | 8 | ......_ | 3 | 85 |
| MIMAT0006941 | oan-miR-103-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0005900 | hsa-miR-1248 | 8 | _...... | 3 | 85 |
| MIMAT0005397 | cre-miR1152 | 2 | _...... | 7 | 85 |
| MIMAT0005240 | smo-miR1088-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005495 | dme-miR-979-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004319 | ath-miR868-3p | 6 | _...... | 1 | 85 |
| MIMAT0004260 | ath-miR838 | 8 | ......_ | 3 | 85 |
| MIMAT0031097 | mdo-miR-103-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0026651 | mdo-miR-22-5p | 8 | ......_ | 3 | 85 |
| MIMAT0003939 | ath-miR780.2 | 6 | ......_ | 1 | 85 |
| MIMAT0003826 | bta-miR-22-5p | 8 | ......_ | 3 | 85 |
| MIMAT0003671 | xtr-miR-22-5p | 8 | ......_ | 3 | 85 |
| MIMAT0003243 | hsa-miR-578 | 6 | _...... | 1 | 85 |
| MIMAT0026584 | mml-miR-107-5p | 8 | _...... | 3 | 85 |
| MIMAT0031959 | dre-miR-107a-5p | 8 | _...... | 3 | 85 |
| MIMAT0031943 | dre-miR-22b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0031942 | dre-miR-22a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0026520 | gga-miR-107-5p | 8 | _...... | 3 | 85 |
| MIMAT0026519 | gga-miR-103-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0017115 | rno-miR-107-5p | 8 | _...... | 3 | 85 |
| MIMAT0017114 | rno-miR-103-1-5p | 8 | _...... | 3 | 85 |
| MIMAT0017113 | rno-miR-103-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0003152 | rno-miR-22-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017048 | mmu-miR-107-5p | 8 | _...... | 3 | 85 |
| MIMAT0017025 | mmu-miR-103-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0017024 | mmu-miR-103-1-5p | 8 | _...... | 3 | 85 |
| MIMAT0004629 | mmu-miR-22-5p | 8 | ......_ | 3 | 85 |
| MIMAT0020783 | dme-miR-2b-2-5p | 6 | ......_ | 1 | 85 |
| MIMAT0009196 | hsa-miR-103a-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0004495 | hsa-miR-22-5p | 8 | ......_ | 3 | 85 |
