| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaagtta | 7 | ||
| MIMAT0036345 | gma-miR9727 | 2 | ....... | 8 | 100 |
| MIMAT0031564 | ppe-miR8133-3p | 7 | ....... | 1 | 100 |
| MIMAT0019751 | hsa-miR-4670-3p | 2 | ....... | 8 | 100 |
| MIMAT0015567 | bmo-miR-3377-5p | 2 | ....... | 8 | 100 |
| MIMAT0007276 | oan-miR-1418-5p | 7 | ....... | 1 | 100 |
| MIMAT0036200 | chi-miR-382-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035978 | chi-miR-148b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0034151 | gra-miR8738b | 8 | _...... | 3 | 85 |
| MIMAT0034150 | gra-miR8738a | 8 | _...... | 3 | 85 |
| MIMAT0033808 | pxy-miR-9b-3p | 3 | _...... | 8 | 85 |
| MIMAT0033600 | sma-miR-8445-5p | 6 | ......_ | 1 | 85 |
| MIMAT0033497 | str-miR-8401-3p | 8 | _...... | 3 | 85 |
| MIMAT0033337 | str-lin-4-3p | 3 | _...... | 8 | 85 |
| MIMAT0031368 | stu-miR169e-3p | 3 | _...... | 8 | 85 |
| MIMAT0031187 | stu-miR7993b-5p | 3 | _...... | 8 | 85 |
| MIMAT0030714 | prd-miR-35a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0029044 | gga-miR-7445-5p | 2 | _...... | 7 | 85 |
| MIMAT0028584 | mdo-miR-7298-5p | 3 | _...... | 8 | 85 |
| MIMAT0028576 | mdo-miR-7296-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026364 | bma-miR-5865 | 8 | _...... | 3 | 85 |
| MIMAT0028029 | mmu-miR-7062-3p | 8 | _...... | 3 | 85 |
| MIMAT0025118 | mmu-miR-6374 | 1 | _...... | 6 | 85 |
| MIMAT0025003 | hme-miR-9a | 3 | _...... | 8 | 85 |
| MIMAT0024551 | cca-miR6112 | 1 | ......_ | 6 | 85 |
| MIMAT0024473 | mse-miR-9a | 3 | _...... | 8 | 85 |
| MIMAT0023947 | cgr-miR-382 | 1 | ......_ | 6 | 85 |
| MIMAT0023778 | cgr-miR-148b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0022277 | hsa-miR-548at-5p | 3 | _...... | 8 | 85 |
| MIMAT0021782 | aca-miR-148b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0021548 | asu-miR-5348-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020282 | ssp-miR437c | 2 | _...... | 7 | 85 |
| MIMAT0020281 | ssp-miR437b | 2 | _...... | 7 | 85 |
| MIMAT0020280 | ssp-miR437a | 2 | _...... | 7 | 85 |
| MIMAT0020029 | sko-miR-4824 | 6 | _...... | 1 | 85 |
| MIMAT0019306 | oar-miR-382-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017931 | aly-miR4242 | 2 | _...... | 7 | 85 |
| MIMAT0016963 | rlcv-miR-rL1-35-3p | 8 | _...... | 3 | 85 |
| MIMAT0015872 | ppy-miR-382 | 1 | ......_ | 6 | 85 |
| MIMAT0015486 | bmo-miR-3297-3p | 6 | _...... | 1 | 85 |
| MIMAT0016957 | rlcv-miR-rL1-32-5p | 6 | _...... | 1 | 85 |
| MIMAT0022955 | ssc-miR-148b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0013150 | eca-miR-382 | 1 | ......_ | 6 | 85 |
| MIMAT0012971 | eca-miR-148b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026953 | mml-miR-543-5p | 1 | ......_ | 6 | 85 |
| MIMAT0013735 | bmo-miR-2824 | 6 | ......_ | 1 | 85 |
| MIMAT0012621 | bmo-miR-9c-3p | 3 | _...... | 8 | 85 |
| MIMAT0013570 | cte-miR-216c | 2 | _...... | 7 | 85 |
| MIMAT0013267 | mtr-miR2591 | 8 | ......_ | 3 | 85 |
| MIMAT0012256 | dps-miR-964-3p | 2 | _...... | 7 | 85 |
| MIMAT0020910 | dme-miR-2489-5p | 2 | _...... | 7 | 85 |
| MIMAT0011792 | bta-miR-2284i | 3 | ......_ | 8 | 85 |
| MIMAT0011386 | sbi-miR821b | 1 | _...... | 6 | 85 |
| MIMAT0011383 | sbi-miR437w | 2 | _...... | 7 | 85 |
| MIMAT0011382 | sbi-miR437v | 2 | _...... | 7 | 85 |
| MIMAT0011381 | sbi-miR437u | 2 | _...... | 7 | 85 |
| MIMAT0011380 | sbi-miR437t | 2 | _...... | 7 | 85 |
| MIMAT0011379 | sbi-miR437s | 2 | _...... | 7 | 85 |
| MIMAT0011378 | sbi-miR437r | 2 | _...... | 7 | 85 |
| MIMAT0011377 | sbi-miR437q | 2 | _...... | 7 | 85 |
| MIMAT0011376 | sbi-miR437p | 2 | _...... | 7 | 85 |
| MIMAT0011375 | sbi-miR437o | 2 | _...... | 7 | 85 |
| MIMAT0011374 | sbi-miR437n | 2 | _...... | 7 | 85 |
| MIMAT0011373 | sbi-miR437m | 2 | _...... | 7 | 85 |
| MIMAT0011372 | sbi-miR437l | 2 | _...... | 7 | 85 |
| MIMAT0011371 | sbi-miR437k | 2 | _...... | 7 | 85 |
| MIMAT0011370 | sbi-miR437j | 2 | _...... | 7 | 85 |
| MIMAT0011369 | sbi-miR437i | 2 | _...... | 7 | 85 |
| MIMAT0011368 | sbi-miR437g | 2 | _...... | 7 | 85 |
| MIMAT0011367 | sbi-miR437f | 2 | _...... | 7 | 85 |
| MIMAT0011366 | sbi-miR437e | 2 | _...... | 7 | 85 |
| MIMAT0011365 | sbi-miR437d | 2 | _...... | 7 | 85 |
| MIMAT0011364 | sbi-miR437c | 2 | _...... | 7 | 85 |
| MIMAT0011363 | sbi-miR437b | 2 | _...... | 7 | 85 |
| MIMAT0011362 | sbi-miR437a | 2 | _...... | 7 | 85 |
| MIMAT0012154 | sme-miR-2163-5p | 6 | _...... | 1 | 85 |
| MIMAT0009308 | bta-miR-382 | 1 | ......_ | 6 | 85 |
| MIMAT0032041 | dvi-miR-314-5p | 7 | _...... | 2 | 85 |
| MIMAT0008134 | ptr-miR-382 | 1 | ......_ | 6 | 85 |
| MIMAT0007855 | ath-miR1888a | 2 | _...... | 7 | 85 |
| MIMAT0026886 | mml-miR-495-5p | 1 | ......_ | 6 | 85 |
| MIMAT0006311 | mml-miR-382-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026826 | mml-miR-148b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0020937 | gma-miR1516a-5p | 2 | _...... | 7 | 85 |
| MIMAT0006973 | oan-miR-1421f-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020871 | dme-miR-974-3p | 8 | _...... | 3 | 85 |
| MIMAT0017249 | mmu-miR-495-5p | 1 | ......_ | 6 | 85 |
| MIMAT0003424 | ebv-miR-BART13-3p | 8 | _...... | 3 | 85 |
| MIMAT0003201 | rno-miR-382-5p | 1 | ......_ | 6 | 85 |
| MIMAT0022924 | hsa-miR-495-5p | 1 | ......_ | 6 | 85 |
| MIMAT0001586 | osa-miR437 | 2 | _...... | 7 | 85 |
| MIMAT0000747 | mmu-miR-382-5p | 1 | ......_ | 6 | 85 |
| MIMAT0000737 | hsa-miR-382-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017036 | mmu-miR-148b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004645 | rno-miR-148b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0020840 | dme-miR-314-5p | 7 | _...... | 2 | 85 |
