| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gacaagc | 7 | ||
| MIMAT0031687 | bbe-miR-4865-5p | 7 | ....... | 1 | 100 |
| MIMAT0020099 | bfl-miR-4865-5p | 7 | ....... | 1 | 100 |
| MIMAT0019351 | mmu-miR-3967 | 8 | ....... | 2 | 100 |
| MIMAT0018075 | hsa-miR-3655 | 7 | ....... | 1 | 100 |
| MIMAT0001579 | hcmv-miR-US5-1 | 2 | ....... | 8 | 100 |
| MIMAT0036753 | oha-miR-1788-5p | 7 | _...... | 2 | 85 |
| MIMAT0036649 | oha-miR-100-3p | 3 | _...... | 8 | 85 |
| MIMAT0035684 | bra-miR408-3p | 7 | _...... | 2 | 85 |
| MIMAT0035346 | gsa-miR-9400-5p | 3 | ......_ | 8 | 85 |
| MIMAT0034631 | eca-miR-9086 | 6 | ......_ | 1 | 85 |
| MIMAT0034050 | gra-miR8679 | 1 | _...... | 6 | 85 |
| MIMAT0033752 | pxy-miR-8521a | 6 | ......_ | 1 | 85 |
| MIMAT0033751 | pxy-miR-8521b | 6 | ......_ | 1 | 85 |
| MIMAT0032412 | ssa-miR-1788-5p | 7 | _...... | 2 | 85 |
| MIMAT0032279 | ssa-miR-100a-2-3p | 1 | _...... | 6 | 85 |
| MIMAT0032278 | ssa-miR-100a-3p | 1 | _...... | 6 | 85 |
| MIMAT0030614 | prd-miR-7902-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030352 | hhi-miR-1788 | 7 | _...... | 2 | 85 |
| MIMAT0029433 | ipu-miR-1788 | 7 | _...... | 2 | 85 |
| MIMAT0029139 | ghr-miR7494 | 7 | _...... | 2 | 85 |
| MIMAT0028997 | oan-miR-7423-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028244 | mml-miR-7163-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027949 | mmu-miR-7022-3p | 1 | _...... | 6 | 85 |
| MIMAT0027839 | mmu-miR-6968-3p | 1 | _...... | 6 | 85 |
| MIMAT0025407 | tgu-miR-1788 | 7 | _...... | 2 | 85 |
| MIMAT0027308 | ppe-miR6279 | 3 | ......_ | 8 | 85 |
| MIMAT0024019 | cgr-miR-6092 | 3 | ......_ | 8 | 85 |
| MIMAT0022430 | ath-miR5657 | 3 | ......_ | 8 | 85 |
| MIMAT0021805 | aca-miR-1788-5p | 7 | _...... | 2 | 85 |
| MIMAT0020629 | mmu-miR-5121 | 7 | _...... | 2 | 85 |
| MIMAT0020530 | ath-miR5024-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019561 | pma-miR-1788a-5p | 7 | _...... | 2 | 85 |
| MIMAT0019438 | pma-miR-100a-3p | 1 | _...... | 6 | 85 |
| MIMAT0018565 | ame-miR-3786 | 6 | ......_ | 1 | 85 |
| MIMAT0016705 | cin-miR-4115-5p | 6 | ......_ | 1 | 85 |
| MIMAT0016634 | cin-miR-4073-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017868 | rno-miR-3580-5p | 7 | _...... | 2 | 85 |
| MIMAT0017772 | esi-miR3457-3p | 8 | _...... | 3 | 85 |
| MIMAT0015507 | bmo-miR-3319 | 1 | _...... | 6 | 85 |
| MIMAT0014633 | tgu-miR-100-3p | 1 | _...... | 6 | 85 |
| MIMAT0011294 | dre-miR-1788-5p | 7 | _...... | 2 | 85 |
| MIMAT0009772 | nve-miR-2027-5p | 6 | _...... | 1 | 85 |
| MIMAT0019115 | tca-miR-125-3p | 1 | _...... | 6 | 85 |
| MIMAT0015273 | bmo-miR-2b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007700 | gga-miR-1788-5p | 7 | _...... | 2 | 85 |
| MIMAT0007625 | gga-miR-1726 | 8 | _...... | 3 | 85 |
| MIMAT0007504 | gga-miR-1632-5p | 7 | _...... | 2 | 85 |
| MIMAT0007476 | gga-miR-1610 | 8 | _...... | 3 | 85 |
| MIMAT0026656 | mdo-miR-100-3p | 8 | _...... | 3 | 85 |
| MIMAT0003920 | mdv1-miR-M1-5p | 7 | _...... | 2 | 85 |
| MIMAT0026580 | mml-miR-100-3p | 8 | _...... | 3 | 85 |
| MIMAT0026539 | gga-miR-100-3p | 8 | _...... | 3 | 85 |
| MIMAT0017051 | mmu-miR-100-3p | 1 | _...... | 6 | 85 |
