| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gacaccc | 7 | ||
| MIMAT0015366 | zma-miR1432-3p | 7 | ....... | 1 | 100 |
| MIMAT0037215 | ata-miR1432-3p | 8 | ......_ | 3 | 85 |
| MIMAT0034989 | efu-miR-9314 | 1 | _...... | 6 | 85 |
| MIMAT0033531 | sma-miR-8413-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033170 | ppc-miR-8316-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030717 | prd-miR-7932-3p | 8 | _...... | 3 | 85 |
| MIMAT0032245 | rgl-miR7804-5p | 8 | _...... | 3 | 85 |
| MIMAT0028744 | mdo-miR-1544b-5p | 1 | _...... | 6 | 85 |
| MIMAT0027631 | hsa-miR-6865-3p | 1 | _...... | 6 | 85 |
| MIMAT0027444 | hsa-miR-6772-5p | 7 | _...... | 2 | 85 |
| MIMAT0027394 | hsa-miR-6747-5p | 8 | _...... | 3 | 85 |
| MIMAT0025776 | gga-miR-6674-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025752 | gga-miR-6652-5p | 7 | _...... | 2 | 85 |
| MIMAT0025408 | tgu-miR-1789 | 7 | _...... | 2 | 85 |
| MIMAT0024301 | ggo-miR-609 | 7 | _...... | 2 | 85 |
| MIMAT0026469 | tur-miR-5728-2-5p | 1 | _...... | 6 | 85 |
| MIMAT0022462 | gma-miR5676 | 3 | ......_ | 8 | 85 |
| MIMAT0021419 | asu-miR-81b-5p | 8 | _...... | 3 | 85 |
| MIMAT0018977 | hsa-miR-4455 | 7 | _...... | 2 | 85 |
| MIMAT0018730 | tca-miR-279c-5p | 7 | _...... | 2 | 85 |
| MIMAT0016581 | cin-miR-4046-5p | 8 | _...... | 3 | 85 |
| MIMAT0014496 | tgu-miR-2986 | 3 | ......_ | 8 | 85 |
| MIMAT0013732 | bmo-miR-2780b | 8 | _...... | 3 | 85 |
| MIMAT0013669 | bmo-miR-2780a-5p | 8 | _...... | 3 | 85 |
| MIMAT0012281 | dps-miR-307b | 3 | _...... | 8 | 85 |
| MIMAT0012195 | dme-miR-307b-3p | 3 | _...... | 8 | 85 |
| MIMAT0012012 | bta-miR-2438 | 8 | _...... | 3 | 85 |
| MIMAT0011212 | mmu-miR-2136 | 8 | _...... | 3 | 85 |
| MIMAT0008272 | ptr-miR-609 | 7 | _...... | 2 | 85 |
| MIMAT0006462 | mml-miR-609 | 7 | _...... | 2 | 85 |
| MIMAT0007702 | gga-miR-1789 | 7 | _...... | 2 | 85 |
| MIMAT0007601 | gga-miR-1708 | 8 | _...... | 3 | 85 |
| MIMAT0022950 | osa-miR1432-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005434 | cre-miR1167 | 7 | _...... | 2 | 85 |
| MIMAT0015220 | hsv1-miR-H1-3p | 2 | _...... | 7 | 85 |
| MIMAT0003277 | hsa-miR-609 | 7 | _...... | 2 | 85 |
| MIMAT0015095 | cel-miR-42-5p | 8 | _...... | 3 | 85 |
