| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gacgcatc | 8 | ||
| MIMAT0030214 | bdi-miR7739-5p | 8 | _....... | 2 | 87 |
| MIMAT0028605 | mdo-miR-7305-3p | 8 | ......._ | 2 | 87 |
| MIMAT0021883 | aca-miR-2188-3p | 7 | _....... | 1 | 87 |
| MIMAT0025322 | bmo-miR-6497-3p | 8 | .c...... | 1 | 87 |
| MIMAT0019957 | hsa-miR-4787-3p | 8 | .g...... | 1 | 87 |
| MIMAT0036596 | tch-miR-324-5p | 1 | __...... | 6 | 75 |
| MIMAT0036555 | tch-miR-9771i | 8 | _......_ | 3 | 75 |
| MIMAT0036135 | chi-miR-324-5p | 1 | __...... | 6 | 75 |
| MIMAT0035397 | nve-miR-9436 | 3 | ......__ | 8 | 75 |
| MIMAT0034744 | eca-miR-9166 | 7 | ......__ | 2 | 75 |
| MIMAT0033256 | ppc-miR-8352-5p | 8 | ......__ | 3 | 75 |
| MIMAT0030678 | prd-miR-7919-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028941 | mdo-miR-7399-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028637 | mdo-miR-7318-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025142 | mmu-miR-6392-3p | 1 | ......__ | 6 | 75 |
| MIMAT0024387 | ppy-miR-3912 | 3 | _......_ | 8 | 75 |
| MIMAT0024130 | ggo-miR-324 | 1 | __...... | 6 | 75 |
| MIMAT0023909 | cgr-miR-324-5p | 1 | __...... | 6 | 75 |
| MIMAT0023550 | ame-miR-6005-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019594 | pma-miR-4562 | 8 | ......__ | 3 | 75 |
| MIMAT0018186 | hsa-miR-3912-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016615 | cin-miR-4063-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015827 | ppy-miR-324-5p | 1 | __...... | 6 | 75 |
| MIMAT0017794 | esi-miR3458-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017624 | aly-miR839-3p | 3 | _......_ | 8 | 75 |
| MIMAT0015638 | bmo-miR-3204b | 6 | ......__ | 1 | 75 |
| MIMAT0013957 | ssc-miR-324 | 1 | __...... | 6 | 75 |
| MIMAT0013033 | eca-miR-324-5p | 1 | __...... | 6 | 75 |
| MIMAT0013582 | cte-miR-2713 | 6 | ......__ | 1 | 75 |
| MIMAT0012366 | dps-miR-2553-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012327 | dps-miR-2536-3p | 7 | _......_ | 2 | 75 |
| MIMAT0011985 | bta-miR-2419-5p | 3 | __...... | 8 | 75 |
| MIMAT0011858 | bta-miR-2328-3p | 7 | ......__ | 2 | 75 |
| MIMAT0009896 | cfa-miR-324 | 1 | __...... | 6 | 75 |
| MIMAT0009285 | bta-miR-324 | 1 | __...... | 6 | 75 |
| MIMAT0007778 | osa-miR1856 | 7 | _......_ | 2 | 75 |
| MIMAT0006266 | mml-miR-324-5p | 1 | __...... | 6 | 75 |
| MIMAT0003936 | ath-miR777 | 2 | _......_ | 7 | 75 |
| MIMAT0003342 | hcmv-miR-UL70-5p | 6 | ......__ | 1 | 75 |
| MIMAT0000761 | hsa-miR-324-5p | 1 | __...... | 6 | 75 |
| MIMAT0031896 | cel-lsy-6-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000555 | mmu-miR-324-5p | 1 | __...... | 6 | 75 |
| MIMAT0000553 | rno-miR-324-5p | 1 | __...... | 6 | 75 |
