| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gacggagt | 8 | ||
| MIMAT0032942 | ppc-miR-8242-5p | 8 | ........ | 1 | 100 |
| MIMAT0028634 | mdo-miR-7317-5p | 8 | _....... | 2 | 87 |
| MIMAT0026418 | sbi-miR6224c-5p | 7 | ......._ | 1 | 87 |
| MIMAT0026416 | sbi-miR6224b-5p | 7 | ......._ | 1 | 87 |
| MIMAT0026414 | sbi-miR6224a-5p | 7 | ......._ | 1 | 87 |
| MIMAT0026355 | bma-miR-5856b | 8 | _....... | 2 | 87 |
| MIMAT0026460 | hhv6b-miR-Ro6-3-5p | 1 | ......._ | 7 | 87 |
| MIMAT0005365 | tae-miR1130a | 8 | ......._ | 2 | 87 |
| MIMAT0004000 | sme-miR-184-3p | 1 | ......._ | 7 | 87 |
| MIMAT0023048 | tur-miR-745-5p | 8 | ......c. | 1 | 87 |
| MIMAT0021326 | mtr-miR5282 | 1 | ......a. | 8 | 87 |
| MIMAT0011837 | bta-miR-2316 | 8 | .c...... | 1 | 87 |
| MIMAT0036493 | tch-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0036156 | chi-miR-340-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036009 | chi-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0035969 | chi-miR-1468-5p | 6 | _......_ | 1 | 75 |
| MIMAT0035538 | bdi-miR5174f | 7 | _......_ | 2 | 75 |
| MIMAT0035303 | gsa-miR-184b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035257 | gsa-miR-96a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0035249 | gsa-miR-184a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0034715 | eca-miR-514a | 8 | __...... | 3 | 75 |
| MIMAT0034423 | cfa-miR-1468 | 6 | _......_ | 1 | 75 |
| MIMAT0033727 | pxy-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0033441 | str-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033244 | ppc-miR-8348-5p | 6 | __...... | 1 | 75 |
| MIMAT0033003 | ppc-miR-2253d-5p | 1 | __...... | 6 | 75 |
| MIMAT0033001 | ppc-miR-2253c-5p | 1 | __...... | 6 | 75 |
| MIMAT0031602 | bbe-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030837 | prd-miR-7967-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030789 | prd-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032238 | rgl-miR7797a | 3 | ......__ | 8 | 75 |
| MIMAT0032211 | lva-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032163 | pmi-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029441 | ipu-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0029102 | gga-miR-7474-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028328 | mml-miR-7187-5p | 8 | _......_ | 3 | 75 |
| MIMAT0026244 | ccr-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0025837 | gga-miR-6599-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025634 | gga-miR-6564-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025536 | bta-miR-6518 | 3 | _......_ | 8 | 75 |
| MIMAT0025386 | ssc-miR-1468 | 6 | _......_ | 1 | 75 |
| MIMAT0025297 | mja-miR-6489-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025170 | mmu-miR-6416-5p | 6 | _......_ | 1 | 75 |
| MIMAT0024943 | hme-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0024477 | mse-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0023921 | cgr-miR-340-3p | 6 | ......__ | 1 | 75 |
| MIMAT0023809 | cgr-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0023294 | osa-miR5821 | 3 | ......__ | 8 | 75 |
| MIMAT0023267 | osa-miR812s | 3 | ......__ | 8 | 75 |
| MIMAT0023254 | osa-miR812p | 1 | ......__ | 6 | 75 |
| MIMAT0022536 | ola-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0023100 | tur-miR-5736a-5p | 3 | __...... | 8 | 75 |
| MIMAT0023078 | tur-miR-5736b-5p | 3 | __...... | 8 | 75 |
| MIMAT0023073 | tur-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021814 | aca-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021502 | asu-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020718 | bdi-miR5174a | 6 | _......_ | 1 | 75 |
| MIMAT0021083 | hsa-miR-5091 | 1 | _......_ | 6 | 75 |
| MIMAT0020561 | osa-miR5075 | 8 | _......_ | 3 | 75 |
| MIMAT0019979 | hsa-miR-4800-3p | 8 | ......__ | 3 | 75 |
| MIMAT0019493 | pma-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0018425 | nlo-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0018398 | ngi-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0018848 | tca-miR-3878-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018528 | ame-miR-3049-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017982 | hsa-miR-3605-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016231 | ppy-miR-1468 | 6 | _......_ | 1 | 75 |
| MIMAT0015935 | ppy-miR-510 | 7 | __...... | 2 | 75 |
| MIMAT0015671 | nvi-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0017760 | esi-miR3454b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0017754 | esi-miR3454f-3p | 8 | ......__ | 3 | 75 |
| MIMAT0017743 | esi-miR3464-5p | 2 | __...... | 7 | 75 |
| MIMAT0014715 | api-miR-184b | 3 | ......__ | 8 | 75 |
| MIMAT0014561 | tgu-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0014455 | tgu-miR-2957 | 2 | __...... | 7 | 75 |
| MIMAT0014424 | cqu-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0014207 | aae-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0014132 | api-miR-184a | 3 | ......__ | 8 | 75 |
| MIMAT0013197 | eca-miR-1468 | 6 | _......_ | 1 | 75 |
| MIMAT0013067 | eca-miR-340-3p | 6 | ......__ | 1 | 75 |
| MIMAT0012894 | eca-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0017362 | rno-miR-802-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012689 | isc-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0013592 | bta-miR-1468 | 6 | _......_ | 1 | 75 |
| MIMAT0009842 | cfa-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0009671 | spu-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0009633 | sko-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0009585 | lgi-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0009531 | cte-miR-184b | 3 | ......__ | 8 | 75 |
| MIMAT0009530 | cte-miR-184a | 3 | ......__ | 8 | 75 |
| MIMAT0009488 | bfl-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015290 | bmo-miR-9b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0009296 | bta-miR-340 | 6 | ......__ | 1 | 75 |
| MIMAT0009246 | bta-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0009122 | dya-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0008989 | dwi-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0008949 | dvi-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0008904 | dsi-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0008822 | dse-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0008701 | dpe-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0008674 | dmo-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0008567 | dgr-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0008512 | der-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0008436 | dan-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0008374 | tca-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007850 | osa-miR812j | 3 | ......__ | 8 | 75 |
| MIMAT0007849 | osa-miR812i | 3 | ......__ | 8 | 75 |
| MIMAT0007848 | osa-miR812h | 3 | ......__ | 8 | 75 |
| MIMAT0007847 | osa-miR812g | 3 | ......__ | 8 | 75 |
| MIMAT0026854 | mml-miR-340-3p | 6 | ......__ | 1 | 75 |
| MIMAT0006218 | mml-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0007527 | gga-miR-1649-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006108 | cin-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0005980 | mdv1-miR-M9-3p | 8 | __...... | 3 | 75 |
| MIMAT0007228 | oan-miR-1410 | 3 | ......__ | 8 | 75 |
| MIMAT0007045 | oan-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0005783 | pbi-miR-510 | 7 | __...... | 2 | 75 |
| MIMAT0005766 | mml-miR-510-5p | 7 | __...... | 2 | 75 |
| MIMAT0005757 | ssy-miR-510 | 7 | __...... | 2 | 75 |
| MIMAT0012542 | mdv2-miR-M23-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004119 | mdo-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004053 | osa-miR812e | 1 | ......__ | 6 | 75 |
| MIMAT0004052 | osa-miR812d | 1 | ......__ | 6 | 75 |
| MIMAT0004051 | osa-miR812c | 1 | ......__ | 6 | 75 |
| MIMAT0004050 | osa-miR812b | 1 | ......__ | 6 | 75 |
| MIMAT0004049 | osa-miR812a | 1 | ......__ | 6 | 75 |
| MIMAT0004015 | sme-miR-748-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003613 | xtr-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0017240 | mmu-miR-802-3p | 1 | _......_ | 6 | 75 |
| MIMAT0006789 | hsa-miR-1468-5p | 6 | _......_ | 1 | 75 |
| MIMAT0002927 | tni-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0002926 | fru-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0002303 | mne-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0002302 | ppy-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0002301 | ptr-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0002127 | ssc-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0001853 | dre-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0001504 | aga-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0001476 | ame-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0001232 | dps-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0001158 | gga-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000861 | rno-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0000750 | hsa-miR-340-3p | 6 | ......__ | 1 | 75 |
| MIMAT0000586 | mmu-miR-340-3p | 6 | ......__ | 1 | 75 |
| MIMAT0000585 | rno-miR-340-3p | 6 | ......__ | 1 | 75 |
| MIMAT0000454 | hsa-miR-184 | 3 | ......__ | 8 | 75 |
| MIMAT0000331 | dme-miR-184-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000213 | mmu-miR-184-3p | 3 | ......__ | 8 | 75 |
