| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gacggtca | 8 | ||
| MIMAT0035507 | bdi-miR9498 | 7 | ......._ | 1 | 87 |
| MIMAT0029964 | mtr-miR2587g | 8 | _....... | 2 | 87 |
| MIMAT0023835 | cgr-miR-1973 | 7 | _....... | 1 | 87 |
| MIMAT0013257 | mtr-miR2587f | 8 | _....... | 2 | 87 |
| MIMAT0013256 | mtr-miR2587e | 8 | _....... | 2 | 87 |
| MIMAT0013255 | mtr-miR2587d | 8 | _....... | 2 | 87 |
| MIMAT0013254 | mtr-miR2587c | 8 | _....... | 2 | 87 |
| MIMAT0013253 | mtr-miR2587b | 8 | _....... | 2 | 87 |
| MIMAT0013252 | mtr-miR2587a | 8 | _....... | 2 | 87 |
| MIMAT0001303 | cbr-miR-360 | 7 | _....... | 1 | 87 |
| MIMAT0000702 | cel-miR-360-3p | 7 | _....... | 1 | 87 |
| MIMAT0037137 | ata-miR169c-3p | 1 | .g...... | 8 | 87 |
| MIMAT0027813 | mmu-miR-6956-3p | 8 | .c...... | 1 | 87 |
| MIMAT0022109 | pti-miR5476 | 8 | .t...... | 1 | 87 |
| MIMAT0018641 | tca-miR-3809-3p | 1 | .t...... | 8 | 87 |
| MIMAT0013544 | cte-miR-2691-5p | 1 | ......g. | 8 | 87 |
| MIMAT0037271 | ame-miR-9867 | 2 | ......__ | 7 | 75 |
| MIMAT0036881 | oha-miR-29a-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0036743 | oha-miR-15b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0036116 | chi-miR-29c-5p | 6 | __...... | 1 | 75 |
| MIMAT0035656 | bra-miR9552b-3p | 6 | __...... | 1 | 75 |
| MIMAT0035566 | dvi-miR-311-5p | 3 | ......__ | 8 | 75 |
| MIMAT0033542 | sma-miR-8419-5p | 8 | __...... | 3 | 75 |
| MIMAT0030513 | prd-miR-7878-3p | 1 | _......_ | 6 | 75 |
| MIMAT0029567 | ipu-miR-7568 | 7 | __...... | 2 | 75 |
| MIMAT0028313 | mml-miR-6827-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028157 | ssc-miR-7141-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027555 | hsa-miR-6827-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025300 | mja-miR-6492 | 8 | __...... | 3 | 75 |
| MIMAT0024792 | hbr-miR6172 | 8 | _......_ | 3 | 75 |
| MIMAT0022163 | osa-miR5528 | 3 | ......__ | 8 | 75 |
| MIMAT0021913 | aca-miR-29a-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0021791 | aca-miR-15b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0021545 | asu-miR-5347-3p | 2 | ......__ | 7 | 75 |
| MIMAT0020725 | bdi-miR5178-3p | 8 | __...... | 3 | 75 |
| MIMAT0019682 | osa-miR812o-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018267 | gma-miR4368a | 3 | ......__ | 8 | 75 |
| MIMAT0016565 | cin-miR-4038-5p | 1 | __...... | 6 | 75 |
| MIMAT0016401 | cin-miR-29-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016307 | sja-miR-3498 | 3 | ......__ | 8 | 75 |
| MIMAT0017774 | esi-miR3467-3p | 2 | _......_ | 7 | 75 |
| MIMAT0031063 | tgu-miR-29a-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0020948 | osa-miR2871a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0026919 | bta-miR-29d-5p | 6 | __...... | 1 | 75 |
| MIMAT0009167 | oan-miR-29a-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0005560 | mcmv-miR-m108-2-5p.1 | 2 | __...... | 7 | 75 |
| MIMAT0005555 | mcmv-miR-m107-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0005551 | mcmv-miR-m88-1-5p | 7 | __...... | 2 | 75 |
| MIMAT0003676 | xtr-miR-29c-5p | 6 | __...... | 1 | 75 |
| MIMAT0004756 | hcmv-miR-US33-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003154 | rno-miR-29c-5p | 6 | __...... | 1 | 75 |
| MIMAT0004673 | hsa-miR-29c-5p | 6 | __...... | 1 | 75 |
| MIMAT0004632 | mmu-miR-29c-5p | 6 | __...... | 1 | 75 |
| MIMAT0020837 | dme-miR-311-5p | 3 | ......__ | 8 | 75 |
