| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gactcgg | 7 | ||
| MIMAT0020361 | cel-miR-58b-5p | 1 | ....... | 7 | 100 |
| MIMAT0037270 | ame-miR-9866 | 8 | ......_ | 3 | 85 |
| MIMAT0035942 | chi-miR-1307-3p | 1 | _...... | 6 | 85 |
| MIMAT0035266 | gsa-miR-2a-5p | 8 | _...... | 3 | 85 |
| MIMAT0035213 | dme-miR-9375-5p | 6 | _...... | 1 | 85 |
| MIMAT0034589 | eca-miR-1307 | 1 | _...... | 6 | 85 |
| MIMAT0033254 | ppc-miR-8351-5p | 2 | _...... | 7 | 85 |
| MIMAT0033091 | ppc-miR-8289-5p | 7 | _...... | 2 | 85 |
| MIMAT0030768 | prd-miR-7949-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028856 | mdo-miR-7386f-5p | 1 | _...... | 6 | 85 |
| MIMAT0023545 | ame-miR-6003-5p | 2 | _...... | 7 | 85 |
| MIMAT0022113 | pti-miR5480 | 3 | ......_ | 8 | 85 |
| MIMAT0019695 | hsa-miR-4638-5p | 1 | _...... | 6 | 85 |
| MIMAT0019612 | pma-miR-4579 | 3 | ......_ | 8 | 85 |
| MIMAT0016227 | ppy-miR-1307 | 1 | _...... | 6 | 85 |
| MIMAT0015596 | bmo-miR-3392 | 6 | ......_ | 1 | 85 |
| MIMAT0026963 | tgu-miR-1729-3p | 3 | _...... | 8 | 85 |
| MIMAT0013936 | ssc-miR-1307 | 1 | _...... | 6 | 85 |
| MIMAT0013859 | bta-miR-2901 | 6 | _...... | 1 | 85 |
| MIMAT0013680 | bmo-miR-2784 | 1 | _...... | 6 | 85 |
| MIMAT0009969 | bta-miR-1307 | 1 | _...... | 6 | 85 |
| MIMAT0008024 | ptr-miR-1307 | 1 | _...... | 6 | 85 |
| MIMAT0006665 | cfa-miR-1307 | 1 | _...... | 6 | 85 |
| MIMAT0007630 | gga-miR-1729-3p | 3 | _...... | 8 | 85 |
| MIMAT0007385 | gma-miR1524 | 6 | ......_ | 1 | 85 |
| MIMAT0005689 | vvi-miR169t | 6 | ......_ | 1 | 85 |
| MIMAT0005951 | hsa-miR-1307-3p | 1 | _...... | 6 | 85 |
| MIMAT0005561 | mcmv-miR-m108-2-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003743 | mmu-miR-712-3p | 8 | ......_ | 3 | 85 |
