| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gactcgga | 8 | ||
| MIMAT0035266 | gsa-miR-2a-5p | 8 | _....... | 2 | 87 |
| MIMAT0028856 | mdo-miR-7386f-5p | 1 | _....... | 7 | 87 |
| MIMAT0020361 | cel-miR-58b-5p | 1 | ......._ | 7 | 87 |
| MIMAT0037270 | ame-miR-9866 | 8 | ......a. | 1 | 87 |
| MIMAT0023988 | cgr-miR-615-3p | 8 | .g...... | 1 | 87 |
| MIMAT0020595 | ssc-miR-615 | 8 | .g...... | 1 | 87 |
| MIMAT0016057 | ppy-miR-615-3p | 8 | .g...... | 1 | 87 |
| MIMAT0012977 | eca-miR-615-3p | 8 | .g...... | 1 | 87 |
| MIMAT0008277 | ptr-miR-615 | 8 | .g...... | 1 | 87 |
| MIMAT0006466 | mml-miR-615-3p | 8 | .g...... | 1 | 87 |
| MIMAT0017328 | mmu-miR-1188-3p | 8 | .c...... | 1 | 87 |
| MIMAT0003783 | mmu-miR-615-3p | 8 | .g...... | 1 | 87 |
| MIMAT0003743 | mmu-miR-712-3p | 8 | ......c. | 1 | 87 |
| MIMAT0003283 | hsa-miR-615-3p | 8 | .g...... | 1 | 87 |
| MIMAT0035942 | chi-miR-1307-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035412 | nve-miR-9451 | 7 | ......__ | 2 | 75 |
| MIMAT0035213 | dme-miR-9375-5p | 6 | _......_ | 1 | 75 |
| MIMAT0035195 | efu-miR-9368 | 6 | __...... | 1 | 75 |
| MIMAT0034625 | eca-miR-9080 | 7 | __...... | 2 | 75 |
| MIMAT0034608 | eca-miR-9063 | 6 | __...... | 1 | 75 |
| MIMAT0034589 | eca-miR-1307 | 1 | _......_ | 6 | 75 |
| MIMAT0034568 | eca-miR-9026 | 8 | __...... | 3 | 75 |
| MIMAT0034384 | cfa-miR-8882 | 6 | __...... | 1 | 75 |
| MIMAT0034175 | gra-miR8749 | 2 | __...... | 7 | 75 |
| MIMAT0033916 | atr-miR166b | 2 | __...... | 7 | 75 |
| MIMAT0033254 | ppc-miR-8351-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033244 | ppc-miR-8348-5p | 8 | __...... | 3 | 75 |
| MIMAT0033180 | ppc-miR-8320-5p | 8 | __...... | 3 | 75 |
| MIMAT0033091 | ppc-miR-8289-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030768 | prd-miR-7949-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030271 | bdi-miR7762-3p | 1 | __...... | 6 | 75 |
| MIMAT0030188 | bdi-miR7728-5p | 3 | __...... | 8 | 75 |
| MIMAT0029994 | mtr-miR7697-5p | 6 | __...... | 1 | 75 |
| MIMAT0029576 | ipu-miR-7577 | 1 | __...... | 6 | 75 |
| MIMAT0025548 | bta-miR-3957 | 1 | __...... | 6 | 75 |
| MIMAT0025079 | mmu-miR-6336 | 2 | __...... | 7 | 75 |
| MIMAT0024903 | gma-miR166u | 2 | __...... | 7 | 75 |
| MIMAT0024566 | cca-miR6118-3p | 7 | __...... | 2 | 75 |
| MIMAT0023545 | ame-miR-6003-5p | 2 | _......_ | 7 | 75 |
| MIMAT0023223 | gma-miR166k | 2 | __...... | 7 | 75 |
| MIMAT0022113 | pti-miR5480 | 3 | ......__ | 8 | 75 |
| MIMAT0020687 | bdi-miR166e-3p | 1 | __...... | 6 | 75 |
| MIMAT0020658 | bdi-miR166f | 2 | __...... | 7 | 75 |
| MIMAT0020984 | gma-miR166h-3p | 2 | __...... | 7 | 75 |
| MIMAT0019695 | hsa-miR-4638-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019614 | pma-miR-4581 | 2 | __...... | 7 | 75 |
| MIMAT0019612 | pma-miR-4579 | 3 | ......__ | 8 | 75 |
| MIMAT0019325 | oar-miR-3957-5p | 1 | __...... | 6 | 75 |
| MIMAT0018191 | hsa-miR-3917 | 2 | __...... | 7 | 75 |
| MIMAT0016227 | ppy-miR-1307 | 1 | _......_ | 6 | 75 |
| MIMAT0017727 | aly-miR3446-5p | 1 | __...... | 6 | 75 |
| MIMAT0015596 | bmo-miR-3392 | 6 | ......__ | 1 | 75 |
| MIMAT0026963 | tgu-miR-1729-3p | 3 | _......_ | 8 | 75 |
| MIMAT0015376 | hsv2-miR-H9-5p | 1 | __...... | 6 | 75 |
| MIMAT0013966 | bhv1-miR-B5 | 1 | __...... | 6 | 75 |
| MIMAT0013936 | ssc-miR-1307 | 1 | _......_ | 6 | 75 |
| MIMAT0013859 | bta-miR-2901 | 6 | _......_ | 1 | 75 |
| MIMAT0013680 | bmo-miR-2784 | 1 | _......_ | 6 | 75 |
| MIMAT0009969 | bta-miR-1307 | 1 | _......_ | 6 | 75 |
| MIMAT0008024 | ptr-miR-1307 | 1 | _......_ | 6 | 75 |
| MIMAT0006665 | cfa-miR-1307 | 1 | _......_ | 6 | 75 |
| MIMAT0007630 | gga-miR-1729-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007609 | gga-miR-1713 | 1 | __...... | 6 | 75 |
| MIMAT0007385 | gma-miR1524 | 6 | ......__ | 1 | 75 |
| MIMAT0005689 | vvi-miR169t | 6 | ......__ | 1 | 75 |
| MIMAT0005951 | hsa-miR-1307-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005561 | mcmv-miR-m108-2-3p | 3 | ......__ | 8 | 75 |
