| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gagttcg | 7 | ||
| MIMAT0031771 | hbv-miR-B26-5p | 2 | ....... | 8 | 100 |
| MIMAT0005856 | mmu-miR-1195 | 2 | ....... | 8 | 100 |
| MIMAT0035695 | bra-miR9563b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0033001 | ppc-miR-2253c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032381 | ssa-miR-148b-5p | 2 | _...... | 7 | 85 |
| MIMAT0031537 | ppe-miR7125-3p | 6 | _...... | 1 | 85 |
| MIMAT0030770 | prd-miR-7950a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030712 | prd-miR-7950c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026059 | mdm-miR7125 | 6 | _...... | 1 | 85 |
| MIMAT0027401 | hsa-miR-6750-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025845 | hsa-miR-6716-3p | 8 | _...... | 3 | 85 |
| MIMAT0025062 | rno-miR-6323 | 8 | ......_ | 3 | 85 |
| MIMAT0024768 | nta-miR6158c | 2 | _...... | 7 | 85 |
| MIMAT0024767 | nta-miR6158b | 2 | _...... | 7 | 85 |
| MIMAT0024766 | nta-miR6158a | 2 | _...... | 7 | 85 |
| MIMAT0023291 | osa-miR5818 | 7 | _...... | 2 | 85 |
| MIMAT0022082 | aca-miR-5455-3p | 1 | ......_ | 6 | 85 |
| MIMAT0021642 | gma-miR159f-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018496 | csi-miR3953 | 3 | ......_ | 8 | 85 |
| MIMAT0018742 | tca-miR-3847-5p | 8 | _...... | 3 | 85 |
| MIMAT0018688 | tca-miR-3829-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017909 | aly-miR4221 | 3 | ......_ | 8 | 85 |
| MIMAT0015043 | hsa-miR-3168 | 1 | ......_ | 6 | 85 |
| MIMAT0014798 | api-miR-3055 | 3 | _...... | 8 | 85 |
| MIMAT0012526 | dsi-miR-983a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012479 | dsi-miR-969-5p | 1 | ......_ | 6 | 85 |
| MIMAT0012275 | dps-miR-969-5p | 1 | ......_ | 6 | 85 |
| MIMAT0012080 | bta-miR-2284e | 2 | _...... | 7 | 85 |
| MIMAT0012068 | bta-miR-2284o | 3 | _...... | 8 | 85 |
| MIMAT0011905 | bta-miR-2284f | 3 | _...... | 8 | 85 |
| MIMAT0010203 | hsv2-miR-H4-5p | 1 | ......_ | 6 | 85 |
| MIMAT0020934 | gma-miR159b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026759 | oan-miR-1395-5p | 8 | _...... | 3 | 85 |
| MIMAT0005485 | dme-miR-969-5p | 1 | ......_ | 6 | 85 |
