| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gatagca | 7 | ||
| MIMAT0033247 | ppc-miR-8349-3p | 8 | ....... | 2 | 100 |
| MIMAT0017693 | aly-miR853-5p | 8 | ....... | 2 | 100 |
| MIMAT0015566 | bmo-miR-3375-3p | 7 | ....... | 1 | 100 |
| MIMAT0015428 | bmo-miR-3246 | 8 | ....... | 2 | 100 |
| MIMAT0017188 | mghv-miR-M1-4-3p | 2 | ....... | 8 | 100 |
| MIMAT0037256 | ata-miR9674b-5p | 8 | _...... | 3 | 85 |
| MIMAT0037204 | ata-miR9674a-5p | 1 | _...... | 6 | 85 |
| MIMAT0037195 | ata-miR9674c-3p | 8 | _...... | 3 | 85 |
| MIMAT0036898 | oha-miR-31-3p | 6 | _...... | 1 | 85 |
| MIMAT0035801 | tae-miR9674b-5p | 1 | _...... | 6 | 85 |
| MIMAT0035064 | efu-miR-31 | 6 | _...... | 1 | 85 |
| MIMAT0034771 | efu-miR-9191 | 6 | _...... | 1 | 85 |
| MIMAT0033628 | sma-miR-8458-5p | 3 | ......_ | 8 | 85 |
| MIMAT0033046 | ppc-miR-8364n-3p | 1 | ......_ | 6 | 85 |
| MIMAT0032961 | ppc-miR-8248-3p | 2 | _...... | 7 | 85 |
| MIMAT0032768 | ath-miR8170-5p | 1 | _...... | 6 | 85 |
| MIMAT0031703 | bbe-miR-4880-5p | 8 | _...... | 3 | 85 |
| MIMAT0030459 | prd-miR-7866-3p | 1 | _...... | 6 | 85 |
| MIMAT0030204 | bdi-miR7717c-5p | 7 | _...... | 2 | 85 |
| MIMAT0023903 | cgr-miR-31-3p | 6 | _...... | 1 | 85 |
| MIMAT0022255 | hsa-miR-4524b-5p | 1 | _...... | 6 | 85 |
| MIMAT0020463 | bfl-miR-4880 | 8 | _...... | 3 | 85 |
| MIMAT0019918 | hsa-miR-4766-3p | 1 | _...... | 6 | 85 |
| MIMAT0019062 | hsa-miR-4524a-5p | 1 | _...... | 6 | 85 |
| MIMAT0016415 | cin-miR-367-5p | 8 | _...... | 3 | 85 |
| MIMAT0014827 | mmu-miR-3060-3p | 3 | _...... | 8 | 85 |
| MIMAT0012308 | dps-miR-2520 | 2 | _...... | 7 | 85 |
| MIMAT0007706 | gga-miR-1792 | 3 | ......_ | 8 | 85 |
| MIMAT0007112 | oan-miR-31-3p | 6 | _...... | 1 | 85 |
| MIMAT0007030 | oan-miR-1366 | 6 | _...... | 1 | 85 |
| MIMAT0005255 | smo-miR1099 | 2 | _...... | 7 | 85 |
| MIMAT0026549 | gga-miR-31-3p | 6 | _...... | 1 | 85 |
| MIMAT0017102 | rno-miR-31a-3p | 6 | _...... | 1 | 85 |
| MIMAT0004634 | mmu-miR-31-3p | 6 | _...... | 1 | 85 |
| MIMAT0004504 | hsa-miR-31-3p | 6 | _...... | 1 | 85 |
