| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gatatcgc | 8 | ||
| MIMAT0001571 | mghv-miR-M1-7-3p | 1 | ........ | 8 | 100 |
| MIMAT0001571 | mghv-miR-M1-7-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033680 | sma-miR-8479-3p | 2 | ......._ | 8 | 87 |
| MIMAT0033680 | sma-miR-8479-3p | 7 | ......__ | 2 | 75 |
| MIMAT0009826 | nve-miR-2043b-5p | 2 | _....... | 8 | 87 |
| MIMAT0009810 | nve-miR-2043a-5p | 2 | _....... | 8 | 87 |
| MIMAT0009174 | oan-miR-1419b-2-3p | 2 | ......._ | 8 | 87 |
| MIMAT0009174 | oan-miR-1419b-2-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007248 | oan-miR-1419c-3p | 2 | ......._ | 8 | 87 |
| MIMAT0007248 | oan-miR-1419c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007706 | gga-miR-1792 | 8 | .c...... | 1 | 87 |
| MIMAT0036725 | oha-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036725 | oha-miR-144-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035204 | dme-miR-9370-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032367 | ssa-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032367 | ssa-miR-144-5p | 7 | ......__ | 2 | 75 |
| MIMAT0031554 | ppe-miR8129-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031554 | ppe-miR8129-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030753 | prd-miR-7946-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030219 | bdi-miR7726b-3p | 7 | __...... | 2 | 75 |
| MIMAT0031145 | aja-miR-3074 | 1 | ......__ | 6 | 75 |
| MIMAT0031145 | aja-miR-3074 | 6 | ......__ | 1 | 75 |
| MIMAT0026361 | bma-miR-5862 | 1 | _......_ | 6 | 75 |
| MIMAT0025436 | pol-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025436 | pol-miR-144-5p | 7 | ......__ | 2 | 75 |
| MIMAT0024219 | ggo-miR-144 | 2 | ......__ | 7 | 75 |
| MIMAT0024219 | ggo-miR-144 | 7 | ......__ | 2 | 75 |
| MIMAT0023773 | cgr-miR-144 | 2 | ......__ | 7 | 75 |
| MIMAT0023773 | cgr-miR-144 | 7 | ......__ | 2 | 75 |
| MIMAT0023686 | ame-miR-6062 | 8 | _......_ | 3 | 75 |
| MIMAT0022626 | ola-miR-144 | 3 | ......__ | 8 | 75 |
| MIMAT0022626 | ola-miR-144 | 8 | ......__ | 3 | 75 |
| MIMAT0022231 | mtr-miR5563-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022231 | mtr-miR5563-5p | 7 | ......__ | 2 | 75 |
| MIMAT0021771 | aca-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021771 | aca-miR-144-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032119 | gma-miR4994-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032119 | gma-miR4994-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019474 | pma-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019474 | pma-miR-144-5p | 7 | ......__ | 2 | 75 |
| MIMAT0018585 | ame-miR-3799 | 8 | _......_ | 3 | 75 |
| MIMAT0016631 | cin-miR-4071-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016631 | cin-miR-4071-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016408 | cin-miR-3599-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017815 | rno-miR-3074 | 1 | ......__ | 6 | 75 |
| MIMAT0017815 | rno-miR-3074 | 6 | ......__ | 1 | 75 |
| MIMAT0015471 | bmo-miR-3285 | 3 | __...... | 8 | 75 |
| MIMAT0015459 | bmo-miR-3274 | 7 | _......_ | 2 | 75 |
| MIMAT0015027 | hsa-miR-3074-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015027 | hsa-miR-3074-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014857 | mmu-miR-3074-1-3p | 1 | ......__ | 6 | 75 |
| MIMAT0014857 | mmu-miR-3074-1-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014650 | tgu-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014650 | tgu-miR-144-5p | 7 | ......__ | 2 | 75 |
| MIMAT0013748 | bmo-miR-2834 | 3 | _......_ | 8 | 75 |
| MIMAT0007071 | oan-miR-1419a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007071 | oan-miR-1419a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0006902 | oan-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0006902 | oan-miR-144-5p | 7 | ......__ | 2 | 75 |
| MIMAT0026669 | mdo-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0026669 | mdo-miR-144-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004023 | sme-miR-756-5p | 6 | _......_ | 1 | 75 |
| MIMAT0026644 | gga-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0026644 | gga-miR-144-5p | 7 | ......__ | 2 | 75 |
| MIMAT0031975 | dre-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031975 | dre-miR-144-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017130 | rno-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017130 | rno-miR-144-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004600 | hsa-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004600 | hsa-miR-144-5p | 7 | ......__ | 2 | 75 |
| MIMAT0016988 | mmu-miR-144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016988 | mmu-miR-144-5p | 7 | ......__ | 2 | 75 |
