| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gatcacca | 8 | ||
| MIMAT0019187 | rlcv-miR-rL1-19-3p | 1 | ........ | 8 | 100 |
| MIMAT0005547 | mcmv-miR-M55-1 | 8 | ........ | 1 | 100 |
| MIMAT0034037 | gra-miR8666 | 8 | _....... | 2 | 87 |
| MIMAT0030766 | prd-miR-7948d-5p | 8 | ......._ | 2 | 87 |
| MIMAT0028671 | mdo-miR-2970-3p | 2 | ......._ | 8 | 87 |
| MIMAT0027701 | mmu-miR-6900-3p | 7 | _....... | 1 | 87 |
| MIMAT0016394 | cin-miR-3575-5p | 1 | _....... | 7 | 87 |
| MIMAT0016283 | sja-miR-3481-3p | 7 | ......._ | 1 | 87 |
| MIMAT0026966 | tgu-miR-2970-3p | 2 | ......._ | 8 | 87 |
| MIMAT0007617 | gga-miR-1720-5p | 2 | ......._ | 8 | 87 |
| MIMAT0020917 | osa-miR169i-5p.2 | 7 | _....... | 1 | 87 |
| MIMAT0034174 | gra-miR7494f | 8 | ......g. | 1 | 87 |
| MIMAT0034173 | gra-miR7494e | 8 | ......g. | 1 | 87 |
| MIMAT0014447 | cel-miR-2953-3p | 1 | ......t. | 8 | 87 |
| MIMAT0005964 | osa-miR1430 | 8 | .c...... | 1 | 87 |
| MIMAT0036035 | chi-miR-197-3p | 2 | __...... | 7 | 75 |
| MIMAT0035355 | gsa-miR-9403-3p | 8 | __...... | 3 | 75 |
| MIMAT0035181 | efu-miR-9364 | 1 | __...... | 6 | 75 |
| MIMAT0035050 | efu-miR-9323 | 1 | __...... | 6 | 75 |
| MIMAT0034788 | efu-miR-9202 | 6 | __...... | 1 | 75 |
| MIMAT0034128 | gra-miR7492k | 7 | ......__ | 2 | 75 |
| MIMAT0034127 | gra-miR7492j | 7 | ......__ | 2 | 75 |
| MIMAT0034126 | gra-miR7492i | 7 | ......__ | 2 | 75 |
| MIMAT0034125 | gra-miR7492h | 7 | ......__ | 2 | 75 |
| MIMAT0034124 | gra-miR7492g | 7 | ......__ | 2 | 75 |
| MIMAT0034085 | gra-miR8675c | 7 | _......_ | 2 | 75 |
| MIMAT0034084 | gra-miR8675b | 7 | _......_ | 2 | 75 |
| MIMAT0034046 | gra-miR8675a | 8 | _......_ | 3 | 75 |
| MIMAT0033285 | ppc-miR-8364t-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031734 | bbe-miR-4856a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0031694 | bbe-miR-4868c-3p | 7 | __...... | 2 | 75 |
| MIMAT0031624 | bbe-miR-2062-3p | 8 | __...... | 3 | 75 |
| MIMAT0031006 | hsa-miR-8079 | 8 | ......__ | 3 | 75 |
| MIMAT0030630 | prd-miR-7579-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030430 | hsa-miR-7855-5p | 7 | __...... | 2 | 75 |
| MIMAT0029868 | mmu-miR-7677-5p | 8 | __...... | 3 | 75 |
| MIMAT0029373 | lja-miR7546 | 7 | __...... | 2 | 75 |
| MIMAT0029145 | ghr-miR7498 | 7 | __...... | 2 | 75 |
| MIMAT0029094 | gga-miR-7470-5p | 7 | ......__ | 2 | 75 |
| MIMAT0029004 | oan-miR-7427-5p | 6 | __...... | 1 | 75 |
| MIMAT0028814 | mdo-miR-7379-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028559 | mdo-miR-7288-3p | 1 | __...... | 6 | 75 |
| MIMAT0028474 | mdo-miR-7254-5p | 1 | __...... | 6 | 75 |
| MIMAT0028006 | mmu-miR-7051-5p | 1 | __...... | 6 | 75 |
| MIMAT0027753 | mmu-miR-6926-3p | 1 | __...... | 6 | 75 |
| MIMAT0025848 | hsa-miR-6511b-3p | 3 | __...... | 8 | 75 |
| MIMAT0025791 | gga-miR-6685-3p | 6 | __...... | 1 | 75 |
| MIMAT0025770 | gga-miR-6669-5p | 6 | _......_ | 1 | 75 |
| MIMAT0025479 | hsa-miR-6511a-3p | 3 | __...... | 8 | 75 |
| MIMAT0025355 | pde-miR3712 | 7 | ......__ | 2 | 75 |
| MIMAT0024814 | hvu-miR6189 | 7 | _......_ | 2 | 75 |
| MIMAT0024559 | cca-miR6108f | 8 | __...... | 3 | 75 |
| MIMAT0024180 | ggo-miR-197 | 2 | __...... | 7 | 75 |
| MIMAT0023665 | ame-miR-6043 | 7 | __...... | 2 | 75 |
| MIMAT0023313 | osa-miR5837.2 | 6 | _......_ | 1 | 75 |
| MIMAT0022467 | gma-miR5679 | 7 | __...... | 2 | 75 |
| MIMAT0022371 | mmu-miR-5622-5p | 2 | __...... | 7 | 75 |
| MIMAT0022311 | cel-miR-356b-5p | 6 | __...... | 1 | 75 |
| MIMAT0020710 | bdi-miR166g-3p | 8 | __...... | 3 | 75 |
| MIMAT0020651 | rgl-miR5140 | 8 | __...... | 3 | 75 |
| MIMAT0020106 | bfl-miR-4868c-5p | 7 | __...... | 2 | 75 |
| MIMAT0019593 | pma-miR-4561 | 8 | __...... | 3 | 75 |
| MIMAT0018632 | tca-miR-3805a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018145 | pab-miR3712 | 7 | ......__ | 2 | 75 |
| MIMAT0016851 | hsa-miR-4299 | 8 | __...... | 3 | 75 |
| MIMAT0016348 | ahy-miR3521 | 6 | __...... | 1 | 75 |
| MIMAT0016346 | ahy-miR3520-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016170 | ppy-miR-1245 | 8 | ......__ | 3 | 75 |
| MIMAT0016162 | ppy-miR-1226 | 1 | __...... | 6 | 75 |
| MIMAT0012959 | eca-miR-197 | 2 | __...... | 7 | 75 |
| MIMAT0019169 | bfl-miR-2062-3p | 8 | __...... | 3 | 75 |
| MIMAT0009257 | bta-miR-197 | 2 | __...... | 7 | 75 |
| MIMAT0032051 | dvi-miR-263a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007971 | ptr-miR-1245 | 8 | ......__ | 3 | 75 |
| MIMAT0007775 | osa-miR1854-5p | 6 | __...... | 1 | 75 |
| MIMAT0006698 | cfa-miR-197 | 2 | __...... | 7 | 75 |
| MIMAT0026902 | mml-miR-598-5p | 8 | _......_ | 3 | 75 |
| MIMAT0006230 | mml-miR-197-3p | 2 | __...... | 7 | 75 |
| MIMAT0007665 | gga-miR-1758 | 1 | __...... | 6 | 75 |
| MIMAT0007535 | gga-miR-1656 | 1 | __...... | 6 | 75 |
| MIMAT0007446 | gga-miR-1354 | 8 | __...... | 3 | 75 |
| MIMAT0015263 | cin-miR-200-5p | 1 | __...... | 6 | 75 |
| MIMAT0005897 | hsa-miR-1245a | 8 | ......__ | 3 | 75 |
| MIMAT0005861 | mml-miR-1240 | 1 | __...... | 6 | 75 |
| MIMAT0005579 | mml-miR-1226 | 1 | __...... | 6 | 75 |
| MIMAT0005578 | ptr-miR-1226 | 1 | __...... | 6 | 75 |
| MIMAT0005577 | hsa-miR-1226-3p | 1 | __...... | 6 | 75 |
| MIMAT0005324 | rno-miR-598-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005274 | smo-miR1115-3p | 1 | __...... | 6 | 75 |
| MIMAT0005191 | ppt-miR1064-3p | 7 | _......_ | 2 | 75 |
| MIMAT0005160 | ppt-miR1046-3p | 6 | __...... | 1 | 75 |
| MIMAT0020873 | dme-miR-976-5p | 8 | __...... | 3 | 75 |
| MIMAT0017283 | mmu-miR-598-5p | 8 | _......_ | 3 | 75 |
| MIMAT0015230 | bmo-miR-263a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026620 | hsa-miR-598-5p | 8 | _......_ | 3 | 75 |
| MIMAT0002604 | ppa-miR-197 | 2 | __...... | 7 | 75 |
| MIMAT0002603 | age-miR-197 | 2 | __...... | 7 | 75 |
| MIMAT0002602 | mne-miR-197 | 2 | __...... | 7 | 75 |
| MIMAT0002601 | ppy-miR-197 | 2 | __...... | 7 | 75 |
| MIMAT0002600 | ptr-miR-197 | 2 | __...... | 7 | 75 |
| MIMAT0001575 | hcmv-miR-UL22A-3p | 1 | __...... | 6 | 75 |
| MIMAT0020799 | dme-miR-263a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0000227 | hsa-miR-197-3p | 2 | __...... | 7 | 75 |
