| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gatcatag | 8 | ||
| MIMAT0003443 | rlcv-miR-rL1-13-3p | 1 | ........ | 8 | 100 |
| MIMAT0037298 | ame-miR-9893 | 8 | ......._ | 2 | 87 |
| MIMAT0036609 | tch-miR-376b-3p | 1 | _....... | 7 | 87 |
| MIMAT0036537 | tch-miR-376a-3p | 1 | _....... | 7 | 87 |
| MIMAT0036189 | chi-miR-376d | 1 | _....... | 7 | 87 |
| MIMAT0036186 | chi-miR-376b-3p | 1 | _....... | 7 | 87 |
| MIMAT0034139 | gra-miR8734 | 1 | ......._ | 7 | 87 |
| MIMAT0030961 | stu-miR8046-5p | 7 | ......._ | 1 | 87 |
| MIMAT0025246 | ptc-miR6443 | 8 | ......._ | 2 | 87 |
| MIMAT0024193 | ggo-miR-376b | 1 | _....... | 7 | 87 |
| MIMAT0024159 | ggo-miR-376a | 1 | _....... | 7 | 87 |
| MIMAT0022393 | ath-miR5633 | 7 | ......._ | 1 | 87 |
| MIMAT0019287 | oar-miR-376a-3p | 1 | _....... | 7 | 87 |
| MIMAT0019285 | oar-miR-376b-3p | 1 | _....... | 7 | 87 |
| MIMAT0019281 | oar-miR-376d | 1 | _....... | 7 | 87 |
| MIMAT0015865 | ppy-miR-376b | 1 | _....... | 7 | 87 |
| MIMAT0015864 | ppy-miR-376a | 1 | _....... | 7 | 87 |
| MIMAT0015716 | ssc-miR-376a-3p | 1 | _....... | 7 | 87 |
| MIMAT0013144 | eca-miR-376b | 1 | _....... | 7 | 87 |
| MIMAT0013143 | eca-miR-376a | 1 | _....... | 7 | 87 |
| MIMAT0013758 | bmo-miR-2841 | 1 | _....... | 7 | 87 |
| MIMAT0009946 | bta-miR-376a | 1 | _....... | 7 | 87 |
| MIMAT0010199 | bta-miR-376d | 1 | _....... | 7 | 87 |
| MIMAT0009945 | bta-miR-376b | 1 | _....... | 7 | 87 |
| MIMAT0009887 | cfa-miR-376b | 1 | _....... | 7 | 87 |
| MIMAT0008127 | ptr-miR-376b | 1 | _....... | 7 | 87 |
| MIMAT0008126 | ptr-miR-376a | 1 | _....... | 7 | 87 |
| MIMAT0006722 | cfa-miR-376a | 1 | _....... | 7 | 87 |
| MIMAT0006304 | mml-miR-376b-3p | 1 | _....... | 7 | 87 |
| MIMAT0006303 | mml-miR-376a-3p | 1 | _....... | 7 | 87 |
| MIMAT0003416 | ebv-miR-BART7-3p | 2 | _....... | 8 | 87 |
| MIMAT0003196 | rno-miR-376b-3p | 1 | _....... | 7 | 87 |
| MIMAT0002172 | hsa-miR-376b-3p | 1 | _....... | 7 | 87 |
| MIMAT0001092 | mmu-miR-376b-3p | 1 | _....... | 7 | 87 |
| MIMAT0000729 | hsa-miR-376a-3p | 1 | _....... | 7 | 87 |
| MIMAT0034249 | gra-miR7492f | 8 | ......g. | 1 | 87 |
| MIMAT0034115 | gra-miR7492e | 8 | ......g. | 1 | 87 |
| MIMAT0037197 | ata-miR167f-3p | 3 | ......__ | 8 | 75 |
| MIMAT0037089 | ata-miR167c-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036505 | tch-miR-539-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036247 | chi-miR-487a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0035987 | chi-miR-154b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035985 | chi-miR-154a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0035798 | tae-miR9675-3p | 8 | _......_ | 3 | 75 |
| MIMAT0034890 | efu-miR-9189h | 2 | __...... | 7 | 75 |
| MIMAT0034489 | eca-miR-154b | 2 | _......_ | 7 | 75 |
| MIMAT0034432 | cfa-miR-507a | 6 | _......_ | 1 | 75 |
| MIMAT0034310 | cfa-miR-8820 | 1 | __...... | 6 | 75 |
| MIMAT0034156 | gra-miR166c | 8 | _......_ | 3 | 75 |
| MIMAT0033769 | pxy-miR-8527 | 6 | __...... | 1 | 75 |
| MIMAT0033644 | sma-miR-8462-3p | 8 | ......__ | 3 | 75 |
| MIMAT0033268 | ppc-miR-8354-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033174 | ppc-miR-8318-5p | 8 | _......_ | 3 | 75 |
| MIMAT0033068 | ppc-miR-8282a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032985 | ppc-miR-8258-3p | 8 | ......__ | 3 | 75 |
| MIMAT0032926 | ppc-miR-8236-5p | 3 | ......__ | 8 | 75 |
| MIMAT0031310 | stu-miR167d-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031308 | stu-miR167a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031306 | stu-miR167b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031275 | stu-miR4376-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030380 | ptc-miR7820 | 1 | _......_ | 6 | 75 |
| MIMAT0032165 | pmi-miR-200-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031049 | mdo-miR-7359b-3p | 1 | __...... | 6 | 75 |
| MIMAT0028731 | mdo-miR-7359a-3p | 1 | __...... | 6 | 75 |
| MIMAT0028593 | mdo-miR-7300-3p | 1 | __...... | 6 | 75 |
| MIMAT0028299 | mml-miR-7177-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025922 | mdm-miR167a | 2 | ......__ | 7 | 75 |
| MIMAT0024753 | nta-miR6145b | 3 | _......_ | 8 | 75 |
| MIMAT0024497 | mse-miR-450 | 3 | ......__ | 8 | 75 |
| MIMAT0024145 | ggo-miR-487a | 2 | _......_ | 7 | 75 |
| MIMAT0023787 | cgr-miR-154-3p | 2 | _......_ | 7 | 75 |
| MIMAT0023440 | hco-miR-63b | 6 | __...... | 1 | 75 |
| MIMAT0023158 | gma-miR5762 | 1 | __...... | 6 | 75 |
| MIMAT0022487 | hsa-miR-5694 | 3 | ......__ | 8 | 75 |
| MIMAT0022452 | gma-miR5670a | 2 | _......_ | 7 | 75 |
| MIMAT0022331 | cin-miR-5603-5p | 7 | _......_ | 2 | 75 |
| MIMAT0022234 | mtr-miR167b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027098 | bdi-miR5201-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020731 | bdi-miR5182 | 8 | ......__ | 3 | 75 |
| MIMAT0027056 | bdi-miR167d-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027050 | bdi-miR167c-3p | 1 | ......__ | 6 | 75 |
| MIMAT0021036 | hsa-miR-5007-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019318 | oar-miR-154b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0019316 | oar-miR-154a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0019305 | oar-miR-487a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019297 | oar-miR-539-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018663 | tca-miR-3805b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0018640 | tca-miR-3809-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018533 | ame-miR-3760 | 2 | _......_ | 7 | 75 |
| MIMAT0018139 | pab-miR3707 | 6 | ......__ | 1 | 75 |
| MIMAT0016664 | cin-miR-4088-5p | 8 | __...... | 3 | 75 |
| MIMAT0016597 | cin-miR-4054-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016543 | cin-miR-4026-3p | 7 | __...... | 2 | 75 |
| MIMAT0016325 | ahy-miR167-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016078 | ppy-miR-640 | 6 | ......__ | 1 | 75 |
| MIMAT0015905 | ppy-miR-487a | 2 | _......_ | 7 | 75 |
| MIMAT0017474 | aly-miR167a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015461 | bmo-miR-3276 | 6 | _......_ | 1 | 75 |
| MIMAT0015322 | zma-miR167j-3p | 1 | ......__ | 6 | 75 |
| MIMAT0013161 | eca-miR-487a | 2 | _......_ | 7 | 75 |
| MIMAT0026938 | mdo-miR-146a-3p | 7 | __...... | 2 | 75 |
| MIMAT0011405 | sme-miR-753d-3p | 2 | ......__ | 7 | 75 |
| MIMAT0012135 | sme-miR-2151-5p | 3 | ......__ | 8 | 75 |
| MIMAT0009902 | cfa-miR-487a | 2 | _......_ | 7 | 75 |
| MIMAT0013801 | spu-miR-200-5p | 2 | _......_ | 7 | 75 |
| MIMAT0008294 | ptr-miR-640 | 6 | ......__ | 1 | 75 |
| MIMAT0008161 | ptr-miR-487a | 2 | _......_ | 7 | 75 |
| MIMAT0006482 | mml-miR-640 | 6 | ......__ | 1 | 75 |
| MIMAT0006346 | mml-miR-487a | 2 | _......_ | 7 | 75 |
| MIMAT0026830 | mml-miR-154-3p | 2 | _......_ | 7 | 75 |
| MIMAT0007624 | gga-miR-1725 | 6 | _......_ | 1 | 75 |
| MIMAT0007402 | hsa-miR-103b | 1 | __...... | 6 | 75 |
| MIMAT0005992 | osa-miR1442 | 3 | __...... | 8 | 75 |
| MIMAT0007321 | oan-miR-1419f-3p | 7 | _......_ | 2 | 75 |
| MIMAT0005242 | smo-miR1089 | 2 | ......__ | 7 | 75 |
| MIMAT0005081 | ppt-miR902i-5p | 7 | _......_ | 2 | 75 |
| MIMAT0005079 | ppt-miR902h-5p | 7 | _......_ | 2 | 75 |
| MIMAT0005077 | ppt-miR902g-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005075 | ppt-miR902f-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005073 | ppt-miR902e-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005071 | ppt-miR902d-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005069 | ppt-miR902c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005523 | cel-miR-1022-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004963 | ppt-miR902b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0004962 | ppt-miR902a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0012120 | sme-miR-277c-5p | 1 | _......_ | 6 | 75 |
| MIMAT0003805 | bta-miR-487a | 2 | _......_ | 7 | 75 |
| MIMAT0003903 | ppt-miR1214 | 8 | __...... | 3 | 75 |
| MIMAT0003310 | hsa-miR-640 | 6 | ......__ | 1 | 75 |
| MIMAT0022705 | hsa-miR-539-3p | 1 | _......_ | 6 | 75 |
| MIMAT0002178 | hsa-miR-487a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0022895 | ptc-miR167h-3p | 2 | ......__ | 7 | 75 |
| MIMAT0022894 | ptc-miR167g-3p | 2 | ......__ | 7 | 75 |
| MIMAT0022893 | ptc-miR167f-3p | 2 | ......__ | 7 | 75 |
| MIMAT0015190 | zma-miR167i-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015189 | zma-miR167h-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015186 | zma-miR167e-3p | 1 | ......__ | 6 | 75 |
| MIMAT0001580 | hcmv-miR-US5-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015145 | zma-miR167c-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015143 | zma-miR167b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015142 | zma-miR167a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0022875 | osa-miR167i-3p | 2 | ......__ | 7 | 75 |
| MIMAT0022873 | osa-miR167e-3p | 2 | ......__ | 7 | 75 |
| MIMAT0022872 | osa-miR167d-3p | 1 | ......__ | 6 | 75 |
| MIMAT0017136 | rno-miR-154-3p | 2 | _......_ | 7 | 75 |
| MIMAT0000453 | hsa-miR-154-3p | 2 | _......_ | 7 | 75 |
| MIMAT0031883 | ath-miR167a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0004537 | mmu-miR-154-3p | 2 | _......_ | 7 | 75 |
