| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gatcttc | 7 | ||
| MIMAT0031768 | hbv-miR-B8-3p | 1 | ....... | 7 | 100 |
| MIMAT0030223 | bdi-miR7741-3p.1 | 2 | ....... | 8 | 100 |
| MIMAT0016657 | cin-miR-4084-5p | 2 | ....... | 8 | 100 |
| MIMAT0013761 | bmo-miR-2842 | 8 | ....... | 2 | 100 |
| MIMAT0015215 | kshv-miR-K12-2-3p | 1 | ....... | 7 | 100 |
| MIMAT0035324 | gsa-miR-184c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033954 | esi-miR8619 | 8 | ......_ | 3 | 85 |
| MIMAT0033193 | ppc-miR-8324-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033151 | ppc-miR-8310-3p | 2 | _...... | 7 | 85 |
| MIMAT0030738 | prd-miR-7940a-5p | 8 | _...... | 3 | 85 |
| MIMAT0030587 | prd-miR-7897-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032249 | rgl-miR7806 | 8 | _...... | 3 | 85 |
| MIMAT0030242 | bdi-miR7751-5p | 1 | _...... | 6 | 85 |
| MIMAT0028233 | hsa-miR-7161-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028041 | mmu-miR-6769b-3p | 2 | _...... | 7 | 85 |
| MIMAT0025783 | gga-miR-6679-5p | 8 | _...... | 3 | 85 |
| MIMAT0025661 | gga-miR-6577-5p | 2 | _...... | 7 | 85 |
| MIMAT0024830 | hvu-miR6202 | 7 | _...... | 2 | 85 |
| MIMAT0024759 | nta-miR6156 | 8 | _...... | 3 | 85 |
| MIMAT0023565 | tca-miR-6012-5p | 3 | ......_ | 8 | 85 |
| MIMAT0023005 | ath-miR5654-3p | 8 | _...... | 3 | 85 |
| MIMAT0022011 | aca-miR-5401 | 3 | _...... | 8 | 85 |
| MIMAT0021679 | sbi-miR5381 | 6 | ......_ | 1 | 85 |
| MIMAT0021617 | gma-miR5376 | 7 | _...... | 2 | 85 |
| MIMAT0019794 | hsa-miR-4699-5p | 7 | _...... | 2 | 85 |
| MIMAT0019709 | hsa-miR-4647 | 6 | _...... | 1 | 85 |
| MIMAT0018941 | hsa-miR-4426 | 6 | _...... | 1 | 85 |
| MIMAT0018535 | ame-miR-3762 | 6 | ......_ | 1 | 85 |
| MIMAT0016766 | cin-miR-4160-3p | 6 | _...... | 1 | 85 |
| MIMAT0016639 | cin-miR-4075-3p | 8 | ......_ | 3 | 85 |
| MIMAT0016375 | gga-miR-3526 | 8 | _...... | 3 | 85 |
| MIMAT0015563 | bmo-miR-3374-5p | 7 | _...... | 2 | 85 |
| MIMAT0014666 | hma-miR-3002 | 8 | _...... | 3 | 85 |
| MIMAT0014310 | aae-miR-263b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0014142 | ath-miR2938 | 1 | ......_ | 6 | 85 |
| MIMAT0013737 | bmo-miR-2826 | 8 | ......_ | 3 | 85 |
| MIMAT0013576 | cte-miR-2708 | 6 | _...... | 1 | 85 |
| MIMAT0013573 | cte-miR-2706 | 6 | _...... | 1 | 85 |
| MIMAT0011564 | crm-miR-48-3p | 3 | _...... | 8 | 85 |
| MIMAT0012132 | sme-miR-61b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0010051 | osa-miR2093-3p | 3 | _...... | 8 | 85 |
| MIMAT0005174 | ppt-miR1056 | 3 | ......_ | 8 | 85 |
| MIMAT0005076 | ppt-miR902f-3p | 8 | _...... | 3 | 85 |
| MIMAT0005523 | cel-miR-1022-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004989 | pta-miR156b | 8 | _...... | 3 | 85 |
| MIMAT0004988 | pta-miR156a | 8 | _...... | 3 | 85 |
| MIMAT0026695 | mdo-miR-141-5p | 1 | _...... | 6 | 85 |
| MIMAT0001322 | ath-miR414 | 3 | _...... | 8 | 85 |
| MIMAT0004598 | hsa-miR-141-5p | 2 | _...... | 7 | 85 |
| MIMAT0004533 | mmu-miR-141-5p | 2 | _...... | 7 | 85 |
