| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gatgagtg | 8 | ||
| MIMAT0033819 | pxy-miR-279b-5p | 1 | ........ | 8 | 100 |
| MIMAT0013606 | bmo-miR-279d-5p | 1 | ........ | 8 | 100 |
| MIMAT0034576 | eca-miR-9034 | 8 | _....... | 2 | 87 |
| MIMAT0033862 | atr-miR8578.2 | 2 | _....... | 8 | 87 |
| MIMAT0031236 | stu-miR5304-3p | 2 | ......._ | 8 | 87 |
| MIMAT0029045 | gga-miR-7445-3p | 2 | ......._ | 8 | 87 |
| MIMAT0012300 | dps-miR-2515 | 2 | ......._ | 8 | 87 |
| MIMAT0027683 | hsa-miR-6891-3p | 8 | ......g. | 1 | 87 |
| MIMAT0006371 | mml-miR-512-5p | 8 | .c...... | 1 | 87 |
| MIMAT0002822 | hsa-miR-512-5p | 8 | .c...... | 1 | 87 |
| MIMAT0037110 | ata-miR2275a-5p | 1 | __...... | 6 | 75 |
| MIMAT0035321 | gsa-miR-71c-3p | 7 | _......_ | 2 | 75 |
| MIMAT0035244 | gsa-miR-279-5p | 3 | __...... | 8 | 75 |
| MIMAT0035143 | efu-miR-9186j | 1 | __...... | 6 | 75 |
| MIMAT0034820 | efu-miR-9223b | 1 | __...... | 6 | 75 |
| MIMAT0034693 | eca-miR-9141 | 3 | __...... | 8 | 75 |
| MIMAT0034618 | eca-miR-9073 | 1 | __...... | 6 | 75 |
| MIMAT0034379 | cfa-miR-8879 | 7 | _......_ | 2 | 75 |
| MIMAT0033712 | pxy-miR-8501 | 2 | __...... | 7 | 75 |
| MIMAT0032958 | ppc-miR-8247-5p | 1 | __...... | 6 | 75 |
| MIMAT0031708 | bbe-miR-4891-5p | 3 | ......__ | 8 | 75 |
| MIMAT0031341 | stu-miR397-5p | 3 | __...... | 8 | 75 |
| MIMAT0031218 | stu-miR8011b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0030900 | stu-miR1886g-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030144 | bdi-miR7711-3p.3 | 2 | _......_ | 7 | 75 |
| MIMAT0030065 | bdi-miR397b-5p | 3 | __...... | 8 | 75 |
| MIMAT0029903 | mmu-miR-7687-3p | 7 | __...... | 2 | 75 |
| MIMAT0029279 | mes-miR397 | 3 | __...... | 8 | 75 |
| MIMAT0029050 | gga-miR-7448-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028342 | mml-miR-7192-5p | 7 | __...... | 2 | 75 |
| MIMAT0028288 | mml-miR-6790-5p | 3 | __...... | 8 | 75 |
| MIMAT0028273 | mml-miR-7169-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028251 | mml-miR-1245-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026100 | cme-miR854 | 1 | ......__ | 6 | 75 |
| MIMAT0026065 | mdm-miR7127b | 8 | _......_ | 3 | 75 |
| MIMAT0026064 | mdm-miR7127a | 8 | _......_ | 3 | 75 |
| MIMAT0025997 | mdm-miR397b | 2 | __...... | 7 | 75 |
| MIMAT0025996 | mdm-miR397a | 2 | __...... | 7 | 75 |
| MIMAT0028024 | mmu-miR-7060-5p | 2 | __...... | 7 | 75 |
| MIMAT0027812 | mmu-miR-6956-5p | 1 | __...... | 6 | 75 |
| MIMAT0027641 | hsa-miR-6870-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027480 | hsa-miR-6790-5p | 2 | __...... | 7 | 75 |
| MIMAT0027417 | hsa-miR-6758-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025308 | prv-miR-LLT5 | 1 | __...... | 6 | 75 |
| MIMAT0025305 | prv-miR-LLT2 | 6 | ......__ | 1 | 75 |
| MIMAT0024806 | hvu-miR6182 | 1 | __...... | 6 | 75 |
| MIMAT0024750 | nta-miR6151i | 1 | __...... | 6 | 75 |
| MIMAT0024749 | nta-miR6151h | 1 | __...... | 6 | 75 |
| MIMAT0024748 | nta-miR6151g | 1 | __...... | 6 | 75 |
| MIMAT0024747 | nta-miR6151f | 1 | __...... | 6 | 75 |
| MIMAT0024711 | nta-miR397 | 3 | __...... | 8 | 75 |
| MIMAT0027170 | lus-miR397a | 3 | __...... | 8 | 75 |
| MIMAT0024577 | bta-miR-574 | 1 | __...... | 6 | 75 |
| MIMAT0024320 | mml-miR-1255a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0024236 | ggo-miR-3605 | 1 | ......__ | 6 | 75 |
| MIMAT0024176 | ggo-miR-1255a | 3 | ......__ | 8 | 75 |
| MIMAT0024000 | cgr-miR-702 | 2 | __...... | 7 | 75 |
| MIMAT0023697 | hsa-miR-6072 | 8 | ......__ | 3 | 75 |
| MIMAT0031162 | stu-miR482d-5p | 3 | __...... | 8 | 75 |
| MIMAT0023408 | hco-miR-5927 | 8 | __...... | 3 | 75 |
| MIMAT0021441 | asu-miR-36b-5p | 3 | __...... | 8 | 75 |
| MIMAT0020532 | ath-miR5026 | 6 | _......_ | 1 | 75 |
| MIMAT0020198 | dme-miR-4971-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020188 | dme-miR-4965-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020507 | dme-miR-4914-5p | 2 | __...... | 7 | 75 |
| MIMAT0020480 | bfl-miR-4891-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019916 | hsa-miR-4765 | 1 | __...... | 6 | 75 |
| MIMAT0019903 | hsa-miR-4758-5p | 2 | __...... | 7 | 75 |
| MIMAT0019878 | hsa-miR-4745-5p | 1 | __...... | 6 | 75 |
| MIMAT0019725 | hsa-miR-4658 | 2 | __...... | 7 | 75 |
| MIMAT0018655 | tca-miR-3815-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018080 | hsa-miR-3659 | 1 | __...... | 6 | 75 |
| MIMAT0018063 | dme-miR-3645-5p | 2 | __...... | 7 | 75 |
| MIMAT0018061 | dme-miR-3644-5p | 2 | __...... | 7 | 75 |
| MIMAT0018057 | dme-miR-3642-5p | 2 | __...... | 7 | 75 |
| MIMAT0018055 | dme-miR-3641-5p | 2 | __...... | 7 | 75 |
| MIMAT0018504 | ath-miR854e | 1 | ......__ | 6 | 75 |
| MIMAT0017920 | aly-miR3444b | 8 | ......__ | 3 | 75 |
| MIMAT0016808 | cin-miR-4190-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016773 | cin-miR-4165-3p | 1 | __...... | 6 | 75 |
| MIMAT0017884 | rno-miR-702-5p | 2 | __...... | 7 | 75 |
| MIMAT0016388 | gga-miR-3537 | 2 | __...... | 7 | 75 |
| MIMAT0016181 | ppy-miR-1255b | 2 | ......__ | 7 | 75 |
| MIMAT0016180 | ppy-miR-1255a | 3 | ......__ | 8 | 75 |
| MIMAT0016002 | ppy-miR-556-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017730 | aly-miR3447-3p | 3 | __...... | 8 | 75 |
| MIMAT0015401 | bmo-miR-3221 | 7 | ......__ | 2 | 75 |
| MIMAT0014933 | mmu-miR-3102-5p | 2 | __...... | 7 | 75 |
| MIMAT0014850 | mmu-miR-3071-5p | 6 | _......_ | 1 | 75 |
| MIMAT0012846 | rno-miR-201-5p | 6 | __...... | 1 | 75 |
| MIMAT0013410 | mtr-miR2642 | 1 | _......_ | 6 | 75 |
| MIMAT0012526 | dsi-miR-983a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012417 | dps-miR-2573-3p | 7 | ......__ | 2 | 75 |
| MIMAT0012412 | dps-miR-2571-5p | 2 | __...... | 7 | 75 |
| MIMAT0012372 | dps-miR-2555-5p | 2 | __...... | 7 | 75 |
| MIMAT0012352 | dps-miR-2546-5p | 2 | __...... | 7 | 75 |
| MIMAT0012194 | dme-miR-307b-5p | 7 | __...... | 2 | 75 |
| MIMAT0011932 | bta-miR-2383 | 2 | __...... | 7 | 75 |
| MIMAT0017344 | mmu-miR-1948-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032047 | dvi-miR-279-5p | 3 | __...... | 8 | 75 |
| MIMAT0032042 | dvi-miR-2a-2-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019096 | tca-miR-2b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019094 | tca-miR-2a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0007980 | ptr-miR-1255b | 3 | ......__ | 8 | 75 |
| MIMAT0007928 | sly-miR397 | 3 | __...... | 8 | 75 |
| MIMAT0007882 | hsa-miR-1909-5p | 1 | __...... | 6 | 75 |
| MIMAT0007505 | gga-miR-1632-3p | 7 | _......_ | 2 | 75 |
| MIMAT0007428 | gga-miR-1568 | 7 | _......_ | 2 | 75 |
| MIMAT0007036 | oan-miR-1371 | 3 | ......__ | 8 | 75 |
| MIMAT0005945 | hsa-miR-1255b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005906 | hsa-miR-1255a | 3 | ......__ | 8 | 75 |
| MIMAT0022947 | hsa-miR-1238-5p | 2 | __...... | 7 | 75 |
| MIMAT0022945 | hsa-miR-1236-5p | 1 | __...... | 6 | 75 |
| MIMAT0005852 | mmu-miR-1194 | 3 | _......_ | 8 | 75 |
| MIMAT0020897 | dme-miR-997-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004893 | mmu-miR-574-5p | 1 | __...... | 6 | 75 |
| MIMAT0004283 | ath-miR854d | 1 | ......__ | 6 | 75 |
| MIMAT0004282 | ath-miR854c | 1 | ......__ | 6 | 75 |
| MIMAT0004281 | ath-miR854b | 1 | ......__ | 6 | 75 |
| MIMAT0004280 | ath-miR854a | 1 | ......__ | 6 | 75 |
| MIMAT0022931 | mmu-miR-702-5p | 2 | __...... | 7 | 75 |
| MIMAT0004795 | hsa-miR-574-5p | 1 | __...... | 6 | 75 |
| MIMAT0003220 | hsa-miR-556-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001636 | hsa-miR-452-3p | 6 | ......__ | 1 | 75 |
| MIMAT0001572 | mghv-miR-M1-8-5p | 8 | __...... | 3 | 75 |
| MIMAT0001008 | ath-miR405d | 1 | _......_ | 6 | 75 |
| MIMAT0001007 | ath-miR405b | 1 | _......_ | 6 | 75 |
| MIMAT0001006 | ath-miR405a | 1 | _......_ | 6 | 75 |
| MIMAT0020781 | dme-miR-2a-2-5p | 7 | ......__ | 2 | 75 |
