| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gatggaag | 8 | ||
| MIMAT0017784 | esi-miR3454d-3p | 8 | ........ | 1 | 100 |
| MIMAT0017770 | esi-miR3454e-3p | 8 | ........ | 1 | 100 |
| MIMAT0017752 | esi-miR3454c-3p | 8 | ........ | 1 | 100 |
| MIMAT0017748 | esi-miR3454a-3p | 8 | ........ | 1 | 100 |
| MIMAT0017746 | esi-miR3454g-3p | 8 | ........ | 1 | 100 |
| MIMAT0004453 | mdv2-miR-M15-5p | 1 | ........ | 8 | 100 |
| MIMAT0003744 | hsv1-miR-H1-5p | 1 | ........ | 8 | 100 |
| MIMAT0033951 | atr-miR2950 | 7 | ......._ | 1 | 87 |
| MIMAT0030259 | bdi-miR7757-5p.2 | 7 | _....... | 1 | 87 |
| MIMAT0029331 | lja-miR1507b | 8 | _....... | 2 | 87 |
| MIMAT0029330 | lja-miR1507a | 8 | _....... | 2 | 87 |
| MIMAT0029309 | mes-miR2950 | 7 | ......._ | 1 | 87 |
| MIMAT0029091 | gga-miR-7468-3p | 2 | ......._ | 8 | 87 |
| MIMAT0026039 | mdm-miR482d | 2 | _....... | 8 | 87 |
| MIMAT0028093 | mmu-miR-7093-3p | 8 | ......._ | 2 | 87 |
| MIMAT0028061 | mmu-miR-7077-3p | 8 | _....... | 2 | 87 |
| MIMAT0028001 | mmu-miR-7048-3p | 8 | _....... | 2 | 87 |
| MIMAT0022453 | gma-miR5671a | 2 | _....... | 8 | 87 |
| MIMAT0018009 | vvi-miR2950-5p | 7 | ......._ | 1 | 87 |
| MIMAT0015651 | hsv2-miR-H6-5p | 2 | _....... | 8 | 87 |
| MIMAT0012732 | mdv2-miR-M32-5p | 8 | ......._ | 2 | 87 |
| MIMAT0011170 | pvu-miR159a.2 | 7 | _....... | 1 | 87 |
| MIMAT0010055 | osa-miR2095-3p | 7 | _....... | 1 | 87 |
| MIMAT0020345 | ath-miR447a.2-3p | 2 | _....... | 8 | 87 |
| MIMAT0015099 | cel-miR-51-3p | 2 | _....... | 8 | 87 |
| MIMAT0021132 | mtr-miR5204 | 1 | .c...... | 8 | 87 |
| MIMAT0011437 | cel-miR-2211-5p | 8 | ......g. | 1 | 87 |
| MIMAT0015281 | hsv1-miR-H6-5p | 1 | .g...... | 8 | 87 |
| MIMAT0003902 | ppt-miR477g-3p | 1 | .t...... | 8 | 87 |
| MIMAT0012127 | sme-miR-756-3p | 8 | ......t. | 1 | 87 |
| MIMAT0037192 | ata-miR528-5p | 1 | __...... | 6 | 75 |
| MIMAT0037034 | ssc-miR-9816-3p | 2 | __...... | 7 | 75 |
| MIMAT0036952 | oha-miR-875-3p | 3 | __...... | 8 | 75 |
| MIMAT0036945 | oha-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0036465 | tch-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0036404 | gma-miR9767 | 1 | _......_ | 6 | 75 |
| MIMAT0036288 | chi-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0035282 | gsa-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0035187 | efu-miR-7c | 1 | __...... | 6 | 75 |
| MIMAT0035167 | efu-miR-9186e | 8 | __...... | 3 | 75 |
| MIMAT0035157 | efu-miR-7a | 2 | __...... | 7 | 75 |
| MIMAT0035004 | efu-miR-7b | 1 | __...... | 6 | 75 |
| MIMAT0034858 | efu-miR-9243a | 7 | _......_ | 2 | 75 |
| MIMAT0034852 | efu-miR-9234c | 8 | __...... | 3 | 75 |
| MIMAT0034458 | eca-miR-8930 | 8 | ......__ | 3 | 75 |
| MIMAT0034314 | cfa-miR-8824 | 8 | _......_ | 3 | 75 |
| MIMAT0034260 | gra-miR8778 | 7 | _......_ | 2 | 75 |
| MIMAT0034204 | gra-miR8768 | 6 | _......_ | 1 | 75 |
| MIMAT0034179 | gra-miR8752 | 2 | ......__ | 7 | 75 |
| MIMAT0034120 | gra-miR8726 | 2 | ......__ | 7 | 75 |
| MIMAT0034008 | gra-miR8650 | 3 | __...... | 8 | 75 |
| MIMAT0033972 | esi-miR8623b | 2 | _......_ | 7 | 75 |
| MIMAT0033620 | sma-miR-8454-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033598 | sma-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0033532 | sma-miR-8414-5p | 7 | __...... | 2 | 75 |
| MIMAT0033524 | sma-miR-8410-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033368 | str-miR-7880n-5p | 2 | ......__ | 7 | 75 |
| MIMAT0033085 | ppc-miR-8288-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032923 | ppc-miR-8234-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032693 | ssa-miR-7a-5p | 1 | __...... | 6 | 75 |
| MIMAT0031714 | bbe-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0031557 | ppe-miR8130-3p | 8 | __...... | 3 | 75 |
| MIMAT0031009 | hsa-miR-8082 | 2 | ......__ | 7 | 75 |
| MIMAT0030972 | stu-miR8048-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030945 | stu-miR8035 | 6 | ......__ | 1 | 75 |
| MIMAT0030930 | stu-miR7980b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031190 | stu-miR8002-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030738 | prd-miR-7940a-5p | 1 | __...... | 6 | 75 |
| MIMAT0030334 | hhi-miR-7790 | 1 | __...... | 6 | 75 |
| MIMAT0030157 | bdi-miR7717a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032191 | lva-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0032141 | pmi-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0029898 | mmu-miR-7686-5p | 7 | __...... | 2 | 75 |
| MIMAT0029527 | ipu-miR-7b | 1 | __...... | 6 | 75 |
| MIMAT0029526 | ipu-miR-7a | 1 | __...... | 6 | 75 |
| MIMAT0028963 | oan-miR-7408-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028938 | mdo-miR-1540b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028726 | mdo-miR-7357-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028696 | mdo-miR-7343-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028513 | mdo-miR-7271-3p | 3 | __...... | 8 | 75 |
| MIMAT0028459 | mdo-miR-7246-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028352 | mml-miR-7196-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028267 | mml-miR-7166-3p | 2 | __...... | 7 | 75 |
| MIMAT0028212 | hsa-miR-7151-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028206 | dre-miR-7148-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026404 | sbi-miR6220-5p | 7 | ......__ | 2 | 75 |
| MIMAT0026328 | ccr-miR-2192 | 1 | __...... | 6 | 75 |
| MIMAT0026320 | ccr-miR-7b | 1 | __...... | 6 | 75 |
| MIMAT0026319 | ccr-miR-7a | 1 | __...... | 6 | 75 |
| MIMAT0028097 | ddi-miR-7095-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028026 | mmu-miR-7061-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027868 | mmu-miR-6983-5p | 2 | __...... | 7 | 75 |
| MIMAT0027734 | mmu-miR-6917-5p | 3 | __...... | 8 | 75 |
| MIMAT0025783 | gga-miR-6679-5p | 1 | __...... | 6 | 75 |
| MIMAT0025681 | gga-miR-6589-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025675 | gga-miR-6584-5p | 3 | __...... | 8 | 75 |
| MIMAT0025652 | gga-miR-6572-3p | 2 | ......__ | 7 | 75 |
| MIMAT0024984 | hme-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0027302 | ppe-miR6275 | 3 | __...... | 8 | 75 |
| MIMAT0024779 | nta-miR6163 | 1 | __...... | 6 | 75 |
| MIMAT0024426 | mse-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0024344 | mml-miR-4650 | 1 | __...... | 6 | 75 |
| MIMAT0024004 | cgr-miR-7b | 1 | __...... | 6 | 75 |
| MIMAT0023820 | cgr-miR-1903 | 2 | __...... | 7 | 75 |
| MIMAT0023704 | hsa-miR-6079 | 2 | __...... | 7 | 75 |
| MIMAT0023592 | sly-miR6023 | 6 | _......_ | 1 | 75 |
| MIMAT0023591 | stu-miR6023 | 6 | _......_ | 1 | 75 |
| MIMAT0023590 | sly-miR6022 | 1 | __...... | 6 | 75 |
| MIMAT0023589 | stu-miR6022 | 1 | __...... | 6 | 75 |
| MIMAT0023588 | nta-miR6021 | 2 | __...... | 7 | 75 |
| MIMAT0026462 | hhv6b-miR-Ro6-4-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023387 | hco-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0022641 | ola-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0023036 | tur-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0022466 | gma-miR5678 | 6 | _......_ | 1 | 75 |
| MIMAT0023005 | ath-miR5654-3p | 1 | __...... | 6 | 75 |
| MIMAT0022402 | ath-miR5641 | 1 | __...... | 6 | 75 |
| MIMAT0022276 | hsa-miR-5581-3p | 6 | _......_ | 1 | 75 |
| MIMAT0022167 | osa-miR5532 | 1 | _......_ | 6 | 75 |
| MIMAT0021983 | aca-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0021429 | asu-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0021394 | rmi-miR-5321 | 2 | _......_ | 7 | 75 |
| MIMAT0021393 | rmi-miR-5320 | 1 | __...... | 6 | 75 |
| MIMAT0021371 | mtr-miR5298c | 2 | ......__ | 7 | 75 |
| MIMAT0021370 | mtr-miR5298b | 2 | ......__ | 7 | 75 |
| MIMAT0021177 | mtr-miR5219 | 3 | _......_ | 8 | 75 |
| MIMAT0020288 | ssp-miR528 | 1 | __...... | 6 | 75 |
| MIMAT0020662 | bdi-miR528-5p | 1 | __...... | 6 | 75 |
| MIMAT0020524 | ath-miR5020a | 1 | __...... | 6 | 75 |
| MIMAT0020259 | emu-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0020233 | egr-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0019603 | pma-miR-4571-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019580 | pma-miR-4548 | 6 | ......__ | 1 | 75 |
| MIMAT0019372 | pma-miR-7b | 1 | __...... | 6 | 75 |
| MIMAT0019370 | pma-miR-7a-5p | 1 | __...... | 6 | 75 |
| MIMAT0020368 | cgr-miR-7a | 1 | __...... | 6 | 75 |
| MIMAT0019073 | hsa-miR-4534 | 2 | ......__ | 7 | 75 |
| MIMAT0019072 | hsa-miR-4533 | 1 | __...... | 6 | 75 |
| MIMAT0018436 | nlo-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0018861 | tca-miR-3882-3p | 1 | __...... | 6 | 75 |
| MIMAT0018846 | tca-miR-3877-5p | 8 | __...... | 3 | 75 |
| MIMAT0018796 | tca-miR-3861-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018116 | hsa-miR-3688-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018064 | dme-miR-3645-3p | 3 | __...... | 8 | 75 |
| MIMAT0017911 | aly-miR4223 | 1 | _......_ | 6 | 75 |
| MIMAT0016810 | cin-miR-4192-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016748 | cin-miR-4145-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016249 | sja-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0016029 | ppy-miR-587 | 7 | _......_ | 2 | 75 |
| MIMAT0015659 | nvi-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0017725 | aly-miR3445-3p.1 | 3 | __...... | 8 | 75 |
| MIMAT0017652 | aly-miR861-3p | 1 | ......__ | 6 | 75 |
| MIMAT0017627 | aly-miR842-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015569 | bmo-miR-3378-5p | 6 | _......_ | 1 | 75 |
| MIMAT0015530 | bmo-miR-3343 | 8 | ......__ | 3 | 75 |
| MIMAT0015384 | bmo-miR-3206 | 8 | ......__ | 3 | 75 |
| MIMAT0015089 | hsa-miR-3202 | 1 | __...... | 6 | 75 |
| MIMAT0022839 | hsa-miR-3190-3p | 3 | __...... | 8 | 75 |
| MIMAT0015057 | hsa-miR-3180-5p | 6 | __...... | 1 | 75 |
| MIMAT0015000 | hsa-miR-3134 | 2 | ......__ | 7 | 75 |
| MIMAT0014734 | api-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0014600 | tgu-miR-2996 | 7 | __...... | 2 | 75 |
| MIMAT0014510 | tgu-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0014423 | cqu-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0014290 | aae-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0014099 | bma-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0019193 | rlcv-miR-rL1-28-5p | 1 | __...... | 6 | 75 |
| MIMAT0019185 | rlcv-miR-rL1-17-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014048 | sbi-miR528 | 1 | __...... | 6 | 75 |
| MIMAT0014029 | zma-miR528b-5p | 1 | __...... | 6 | 75 |
| MIMAT0014028 | zma-miR528a-5p | 1 | __...... | 6 | 75 |
| MIMAT0012905 | eca-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0012724 | iltv-miR-I1-3p | 8 | _......_ | 3 | 75 |
| MIMAT0012702 | isc-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0012666 | dpu-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0013316 | mtr-miR2609b | 1 | __...... | 6 | 75 |
| MIMAT0013315 | mtr-miR2609a | 1 | __...... | 6 | 75 |
| MIMAT0012317 | dps-miR-2527 | 2 | ......__ | 7 | 75 |
| MIMAT0011981 | bta-miR-2417 | 2 | ......__ | 7 | 75 |
| MIMAT0011939 | bta-miR-2387 | 1 | __...... | 6 | 75 |
| MIMAT0011271 | sme-miR-2171 | 3 | ......__ | 8 | 75 |
| MIMAT0011253 | sme-miR-7d-5p | 1 | __...... | 6 | 75 |
| MIMAT0010150 | mcv-miR-M1-5p | 1 | __...... | 6 | 75 |
| MIMAT0011158 | hsa-miR-2115-5p | 8 | __...... | 3 | 75 |
| MIMAT0009753 | aqu-miR-2021-5p | 2 | _......_ | 7 | 75 |
| MIMAT0009651 | spu-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0009608 | sko-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0009560 | lgi-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0009506 | cte-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0009464 | bfl-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0009442 | mmu-miR-1969 | 3 | ......__ | 8 | 75 |
| MIMAT0009119 | dya-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0009009 | dwi-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0008931 | dvi-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0008901 | dsi-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0008771 | dse-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0008742 | dpe-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0008692 | dmo-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0008622 | dgr-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0008537 | der-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0008410 | dan-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0008355 | tca-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0008259 | ptr-miR-587 | 7 | _......_ | 2 | 75 |
| MIMAT0006768 | cel-miR-1828 | 3 | __...... | 8 | 75 |
| MIMAT0006634 | cfa-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0006159 | mml-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0007496 | gga-miR-1626-3p | 3 | __...... | 8 | 75 |
| MIMAT0007495 | gga-miR-1626-5p | 7 | _......_ | 2 | 75 |
| MIMAT0006120 | csa-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0006091 | cin-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0006078 | odi-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0005985 | mdv1-miR-M13 | 3 | _......_ | 8 | 75 |
| MIMAT0007205 | oan-miR-1400-5p | 1 | ......__ | 6 | 75 |
| MIMAT0006986 | oan-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0006973 | oan-miR-1421f-5p | 1 | __...... | 6 | 75 |
| MIMAT0006969 | oan-miR-1421d-5p | 1 | __...... | 6 | 75 |
| MIMAT0006868 | oan-miR-1340-5p | 6 | __...... | 1 | 75 |
| MIMAT0005429 | cre-miR1170.1 | 8 | ......__ | 3 | 75 |
| MIMAT0004306 | ath-miR861-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026695 | mdo-miR-141-5p | 8 | __...... | 3 | 75 |
| MIMAT0004086 | mdo-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0003971 | sme-miR-7c-5p | 1 | __...... | 6 | 75 |
| MIMAT0003970 | sme-miR-7b-5p | 1 | __...... | 6 | 75 |
| MIMAT0003969 | sme-miR-7a-5p | 1 | __...... | 6 | 75 |
| MIMAT0003843 | bta-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0004192 | bmo-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0003552 | xtr-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0003253 | hsa-miR-587 | 7 | _......_ | 2 | 75 |
| MIMAT0003010 | tni-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0003009 | fru-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0002884 | osa-miR528-5p | 1 | __...... | 6 | 75 |
| MIMAT0002485 | ptr-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0002484 | ppa-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0002483 | mne-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0002482 | lla-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0002481 | sla-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0002480 | ppy-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0002479 | ggo-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0026561 | mml-miR-141-5p | 7 | __...... | 2 | 75 |
| MIMAT0002141 | ssc-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0001523 | aga-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0001489 | ame-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0001266 | dre-miR-7a | 1 | __...... | 6 | 75 |
| MIMAT0001265 | dre-miR-7b | 1 | __...... | 6 | 75 |
| MIMAT0001209 | dps-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0001192 | gga-miR-7b | 1 | __...... | 6 | 75 |
| MIMAT0001157 | gga-miR-7 | 1 | __...... | 6 | 75 |
| MIMAT0017128 | rno-miR-141-5p | 6 | ......__ | 1 | 75 |
| MIMAT0000780 | rno-miR-7b | 1 | __...... | 6 | 75 |
| MIMAT0000678 | mmu-miR-7b-5p | 1 | __...... | 6 | 75 |
| MIMAT0000677 | mmu-miR-7a-5p | 1 | __...... | 6 | 75 |
| MIMAT0000606 | rno-miR-7a-5p | 1 | __...... | 6 | 75 |
| MIMAT0000252 | hsa-miR-7-5p | 1 | __...... | 6 | 75 |
| MIMAT0000112 | dme-miR-7-5p | 1 | __...... | 6 | 75 |
