| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gatggat | 7 | ||
| MIMAT0033368 | str-miR-7880n-5p | 2 | ....... | 8 | 100 |
| MIMAT0030157 | bdi-miR7717a-3p | 1 | ....... | 7 | 100 |
| MIMAT0028212 | hsa-miR-7151-5p | 8 | ....... | 2 | 100 |
| MIMAT0017652 | aly-miR861-3p | 1 | ....... | 7 | 100 |
| MIMAT0015384 | bmo-miR-3206 | 8 | ....... | 2 | 100 |
| MIMAT0015000 | hsa-miR-3134 | 2 | ....... | 8 | 100 |
| MIMAT0012317 | dps-miR-2527 | 2 | ....... | 8 | 100 |
| MIMAT0004306 | ath-miR861-3p | 1 | ....... | 7 | 100 |
| MIMAT0012127 | sme-miR-756-3p | 8 | ....... | 2 | 100 |
| MIMAT0036936 | oha-miR-490-5p | 3 | _...... | 8 | 85 |
| MIMAT0036364 | gma-miR9744 | 2 | _...... | 7 | 85 |
| MIMAT0035326 | gsa-miR-9391-5p | 6 | _...... | 1 | 85 |
| MIMAT0034458 | eca-miR-8930 | 8 | ......_ | 3 | 85 |
| MIMAT0034412 | cfa-miR-8902 | 7 | _...... | 2 | 85 |
| MIMAT0033885 | atr-miR8596 | 3 | _...... | 8 | 85 |
| MIMAT0033883 | atr-miR8594.2 | 2 | _...... | 7 | 85 |
| MIMAT0033716 | pxy-miR-8504 | 8 | _...... | 3 | 85 |
| MIMAT0033428 | str-miR-8384-5p | 1 | _...... | 6 | 85 |
| MIMAT0032771 | ath-miR8172 | 1 | _...... | 6 | 85 |
| MIMAT0030945 | stu-miR8035 | 6 | ......_ | 1 | 85 |
| MIMAT0030930 | stu-miR7980b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028991 | oan-miR-7420-3p | 2 | _...... | 7 | 85 |
| MIMAT0028963 | oan-miR-7408-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028846 | mdo-miR-7386j-5p | 3 | _...... | 8 | 85 |
| MIMAT0028726 | mdo-miR-7357-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028521 | mdo-miR-7273-3p | 8 | _...... | 3 | 85 |
| MIMAT0028352 | mml-miR-7196-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028311 | mml-miR-7182-3p | 1 | _...... | 6 | 85 |
| MIMAT0028197 | dev-miR-D21-3p | 6 | _...... | 1 | 85 |
| MIMAT0028093 | mmu-miR-7093-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027712 | mmu-miR-6906-5p | 1 | _...... | 6 | 85 |
| MIMAT0024567 | bta-miR-1246 | 2 | _...... | 7 | 85 |
| MIMAT0026462 | hhv6b-miR-Ro6-4-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032130 | gma-miR5667-5p | 7 | _...... | 2 | 85 |
| MIMAT0021976 | aca-miR-490-5p | 3 | _...... | 8 | 85 |
| MIMAT0021546 | asu-miR-36f-5p | 3 | _...... | 8 | 85 |
| MIMAT0021254 | mtr-miR5256 | 3 | _...... | 8 | 85 |
| MIMAT0020730 | bdi-miR5181a-5p | 8 | _...... | 3 | 85 |
| MIMAT0019580 | pma-miR-4548 | 6 | ......_ | 1 | 85 |
| MIMAT0017959 | ssc-miR-490-5p | 3 | _...... | 8 | 85 |
| MIMAT0015909 | ppy-miR-490-5p | 3 | _...... | 8 | 85 |
| MIMAT0017784 | esi-miR3454d-3p | 8 | ......_ | 3 | 85 |
| MIMAT0017770 | esi-miR3454e-3p | 8 | ......_ | 3 | 85 |
| MIMAT0017752 | esi-miR3454c-3p | 8 | ......_ | 3 | 85 |
| MIMAT0017748 | esi-miR3454a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0017746 | esi-miR3454g-3p | 8 | ......_ | 3 | 85 |
| MIMAT0017740 | ath-miR774b-3p | 7 | _...... | 2 | 85 |
| MIMAT0017627 | aly-miR842-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015530 | bmo-miR-3343 | 8 | ......_ | 3 | 85 |
| MIMAT0014949 | mmu-miR-3109-5p | 2 | _...... | 7 | 85 |
| MIMAT0026996 | tgu-miR-490-5p | 3 | _...... | 8 | 85 |
| MIMAT0012944 | eca-miR-490-5p | 3 | _...... | 8 | 85 |
| MIMAT0017356 | rno-miR-490-5p | 3 | _...... | 8 | 85 |
| MIMAT0012732 | mdv2-miR-M32-5p | 8 | ......_ | 3 | 85 |
| MIMAT0011945 | bta-miR-2392 | 1 | _...... | 6 | 85 |
| MIMAT0011625 | crm-miR-2228 | 8 | _...... | 3 | 85 |
| MIMAT0011437 | cel-miR-2211-5p | 8 | ......_ | 3 | 85 |
| MIMAT0011271 | sme-miR-2171 | 3 | ......_ | 8 | 85 |
| MIMAT0010028 | mtr-miR1510b-5p | 3 | _...... | 8 | 85 |
| MIMAT0009442 | mmu-miR-1969 | 3 | ......_ | 8 | 85 |
| MIMAT0007972 | ptr-miR-1246 | 2 | _...... | 7 | 85 |
| MIMAT0007828 | osa-miR1874-3p | 2 | _...... | 7 | 85 |
| MIMAT0007772 | osa-miR1852 | 3 | _...... | 8 | 85 |
| MIMAT0006350 | mml-miR-490-5p | 3 | _...... | 8 | 85 |
| MIMAT0009175 | oan-miR-1422b-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0007205 | oan-miR-1400-5p | 1 | ......_ | 6 | 85 |
| MIMAT0006891 | oan-miR-1422c-5p | 8 | _...... | 3 | 85 |
| MIMAT0006885 | oan-miR-1422b-1-5p | 7 | _...... | 2 | 85 |
| MIMAT0006810 | oan-miR-490-5p | 3 | _...... | 8 | 85 |
| MIMAT0005913 | hsa-miR-1261 | 1 | _...... | 6 | 85 |
| MIMAT0005898 | hsa-miR-1246 | 2 | _...... | 7 | 85 |
| MIMAT0005429 | cre-miR1170.1 | 8 | ......_ | 3 | 85 |
| MIMAT0004453 | mdv2-miR-M15-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017261 | mmu-miR-490-5p | 3 | _...... | 8 | 85 |
| MIMAT0003744 | hsv1-miR-H1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026633 | gga-miR-490-5p | 3 | _...... | 8 | 85 |
| MIMAT0004764 | hsa-miR-490-5p | 3 | _...... | 8 | 85 |
| MIMAT0017128 | rno-miR-141-5p | 6 | ......_ | 1 | 85 |
