| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gatgtctt | 8 | ||
| MIMAT0003751 | dre-miR-723-3p | 8 | ........ | 1 | 100 |
| MIMAT0032670 | ssa-miR-723-3p | 7 | ......._ | 1 | 87 |
| MIMAT0030946 | stu-miR8036-3p | 2 | _....... | 8 | 87 |
| MIMAT0030246 | bdi-miR7753-5p | 1 | _....... | 7 | 87 |
| MIMAT0029362 | lja-miR7536b | 8 | _....... | 2 | 87 |
| MIMAT0029361 | lja-miR7536a | 8 | _....... | 2 | 87 |
| MIMAT0029126 | ghr-miR7485 | 8 | _....... | 2 | 87 |
| MIMAT0025695 | gga-miR-6601-3p | 1 | ......._ | 7 | 87 |
| MIMAT0024372 | ppy-miR-3617 | 8 | _....... | 2 | 87 |
| MIMAT0024262 | ggo-miR-641 | 8 | _....... | 2 | 87 |
| MIMAT0019225 | hsa-miR-3913-3p | 7 | ......._ | 1 | 87 |
| MIMAT0017997 | hsa-miR-3617-5p | 8 | _....... | 2 | 87 |
| MIMAT0014799 | api-miR-3056 | 8 | _....... | 2 | 87 |
| MIMAT0013466 | mtr-miR2660 | 8 | _....... | 2 | 87 |
| MIMAT0012136 | sme-miR-87d-5p | 2 | _....... | 8 | 87 |
| MIMAT0008295 | ptr-miR-641 | 8 | _....... | 2 | 87 |
| MIMAT0003311 | hsa-miR-641 | 8 | _....... | 2 | 87 |
| MIMAT0003113 | rno-miR-489-3p | 8 | ......a. | 1 | 87 |
| MIMAT0035802 | tae-miR9676-5p | 3 | ......__ | 8 | 75 |
| MIMAT0034755 | eca-miR-9175 | 7 | _......_ | 2 | 75 |
| MIMAT0034453 | eca-miR-8925 | 7 | _......_ | 2 | 75 |
| MIMAT0033792 | pxy-miR-8537b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0033669 | sma-miR-8474-5p | 1 | __...... | 6 | 75 |
| MIMAT0033214 | ppc-miR-8335-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032818 | cel-miR-8202-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032658 | ssa-miR-489-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031237 | stu-miR8049-3p | 2 | _......_ | 7 | 75 |
| MIMAT0030775 | prd-miR-7951-3p | 8 | __...... | 3 | 75 |
| MIMAT0030317 | bdi-miR7781-3p | 2 | _......_ | 7 | 75 |
| MIMAT0029806 | mmu-miR-219b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0029787 | tgu-miR-7643-3p | 6 | ......__ | 1 | 75 |
| MIMAT0029520 | ipu-miR-489 | 7 | ......__ | 2 | 75 |
| MIMAT0029153 | ghr-miR7506 | 1 | _......_ | 6 | 75 |
| MIMAT0026308 | ccr-miR-489 | 7 | ......__ | 2 | 75 |
| MIMAT0028129 | mmu-miR-7116-5p | 8 | __...... | 3 | 75 |
| MIMAT0028105 | ddi-miR-7102 | 2 | __...... | 7 | 75 |
| MIMAT0027561 | hsa-miR-6830-3p | 1 | __...... | 6 | 75 |
| MIMAT0027382 | hsa-miR-6740-3p | 1 | __...... | 6 | 75 |
| MIMAT0025219 | ptc-miR6425e | 2 | __...... | 7 | 75 |
| MIMAT0025214 | ptc-miR6425d-5p | 2 | __...... | 7 | 75 |
| MIMAT0025207 | ptc-miR6425c-5p | 2 | __...... | 7 | 75 |
| MIMAT0025198 | ptc-miR6425b-5p | 2 | __...... | 7 | 75 |
| MIMAT0025190 | ptc-miR6425a-5p | 2 | __...... | 7 | 75 |
| MIMAT0025053 | rno-miR-6316 | 2 | _......_ | 7 | 75 |
| MIMAT0024978 | hme-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0024736 | nta-miR6147 | 7 | ......__ | 2 | 75 |
| MIMAT0024434 | mse-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0023519 | ath-miR5996 | 7 | ......__ | 2 | 75 |
| MIMAT0023178 | gma-miR1516c | 2 | _......_ | 7 | 75 |
| MIMAT0023115 | tur-miR-305-3p | 6 | ......__ | 1 | 75 |
| MIMAT0022251 | sbi-miR5570 | 8 | __...... | 3 | 75 |
| MIMAT0022028 | aca-miR-5410-3p | 8 | ......__ | 3 | 75 |
| MIMAT0021975 | aca-miR-489-3p | 8 | ......__ | 3 | 75 |
| MIMAT0021794 | aca-miR-1662-5p | 8 | ......__ | 3 | 75 |
| MIMAT0019817 | hsa-miR-4711-3p | 3 | __...... | 8 | 75 |
| MIMAT0019747 | hsa-miR-219b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019283 | oar-miR-654-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018716 | tca-miR-316-5p | 1 | __...... | 6 | 75 |
| MIMAT0017882 | rno-miR-219b | 2 | ......__ | 7 | 75 |
| MIMAT0016088 | ppy-miR-654-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015936 | ppy-miR-511 | 2 | __...... | 7 | 75 |
| MIMAT0015908 | ppy-miR-489 | 8 | ......__ | 3 | 75 |
| MIMAT0015887 | ppy-miR-431 | 1 | __...... | 6 | 75 |
| MIMAT0015465 | bmo-miR-3280 | 7 | ......__ | 2 | 75 |
| MIMAT0015456 | bmo-miR-3271 | 7 | ......__ | 2 | 75 |
| MIMAT0015455 | bmo-miR-3270 | 1 | __...... | 6 | 75 |
| MIMAT0014855 | mmu-miR-3073a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0014757 | api-miR-3021 | 2 | __...... | 7 | 75 |
| MIMAT0014731 | api-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0014618 | tgu-miR-489-3p | 8 | ......__ | 3 | 75 |
| MIMAT0014459 | tgu-miR-1662 | 8 | ......__ | 3 | 75 |
| MIMAT0014442 | cqu-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0014317 | aae-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0013156 | eca-miR-431 | 1 | __...... | 6 | 75 |
| MIMAT0012943 | eca-miR-489 | 8 | ......__ | 3 | 75 |
| MIMAT0013597 | bmo-miR-316-5p | 1 | __...... | 6 | 75 |
| MIMAT0012518 | dsi-miR-2581 | 8 | __...... | 3 | 75 |
| MIMAT0012511 | dsi-miR-2578 | 8 | __...... | 3 | 75 |
| MIMAT0012142 | sme-miR-1992-5p | 2 | __...... | 7 | 75 |
| MIMAT0010122 | ame-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0010032 | mtr-miR1510a-5p | 2 | __...... | 7 | 75 |
| MIMAT0009942 | bta-miR-489 | 8 | ......__ | 3 | 75 |
| MIMAT0009860 | cfa-miR-489 | 8 | ......__ | 3 | 75 |
| MIMAT0009819 | nve-miR-2047-3p | 8 | _......_ | 3 | 75 |
| MIMAT0009359 | bta-miR-654 | 2 | _......_ | 7 | 75 |
| MIMAT0009316 | bta-miR-431 | 1 | __...... | 6 | 75 |
| MIMAT0009080 | dya-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0009021 | dwi-miR-309 | 7 | __...... | 2 | 75 |
| MIMAT0009000 | dwi-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0008945 | dvi-miR-316-5p | 1 | __...... | 6 | 75 |
| MIMAT0008869 | dsi-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0008818 | dse-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0008764 | dpe-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0008627 | dmo-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0008591 | dgr-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0008496 | der-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0008449 | dan-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0008304 | ptr-miR-654 | 2 | _......_ | 7 | 75 |
| MIMAT0008179 | ptr-miR-511 | 2 | __...... | 7 | 75 |
| MIMAT0008164 | ptr-miR-489 | 8 | ......__ | 3 | 75 |
| MIMAT0008145 | ptr-miR-431 | 1 | __...... | 6 | 75 |
| MIMAT0006496 | mml-miR-654-3p | 2 | _......_ | 7 | 75 |
| MIMAT0006370 | mml-miR-511-5p | 1 | __...... | 6 | 75 |
| MIMAT0006349 | mml-miR-489-3p | 8 | ......__ | 3 | 75 |
| MIMAT0006326 | mml-miR-431 | 1 | __...... | 6 | 75 |
| MIMAT0007543 | gga-miR-1662 | 8 | ......__ | 3 | 75 |
| MIMAT0007323 | oan-miR-1419g-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007263 | oan-miR-1419e-3p | 2 | ......__ | 7 | 75 |
| MIMAT0005853 | mmu-miR-669e-5p | 1 | __...... | 6 | 75 |
| MIMAT0005280 | rno-miR-743b-3p | 8 | __...... | 3 | 75 |
| MIMAT0004898 | mmu-miR-654-3p | 2 | _......_ | 7 | 75 |
| MIMAT0004840 | mmu-miR-743b-3p | 8 | __...... | 3 | 75 |
| MIMAT0004309 | ath-miR863-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004238 | mmu-miR-743a-3p | 8 | __...... | 3 | 75 |
| MIMAT0012099 | sme-miR-8a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012095 | sme-miR-2d-5p | 6 | ......__ | 1 | 75 |
| MIMAT0003494 | mmu-miR-704 | 6 | _......_ | 1 | 75 |
| MIMAT0026635 | gga-miR-429-5p | 1 | __...... | 6 | 75 |
| MIMAT0004814 | hsa-miR-654-3p | 2 | _......_ | 7 | 75 |
| MIMAT0003257 | hsa-miR-550a-3p | 1 | __...... | 6 | 75 |
| MIMAT0002808 | hsa-miR-511-5p | 2 | __...... | 7 | 75 |
| MIMAT0002805 | hsa-miR-489-3p | 8 | ......__ | 3 | 75 |
| MIMAT0001626 | rno-miR-431 | 1 | __...... | 6 | 75 |
| MIMAT0001625 | hsa-miR-431-5p | 1 | __...... | 6 | 75 |
| MIMAT0001418 | mmu-miR-431-5p | 1 | __...... | 6 | 75 |
| MIMAT0001414 | oar-miR-431 | 1 | __...... | 6 | 75 |
| MIMAT0001262 | dps-miR-316 | 1 | __...... | 6 | 75 |
| MIMAT0000408 | dme-miR-316-5p | 1 | __...... | 6 | 75 |
| MIMAT0020308 | cel-miR-43-5p | 6 | ......__ | 1 | 75 |
