| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gattgtgc | 8 | ||
| MIMAT0001584 | hcmv-miR-US33-5p | 1 | ........ | 8 | 100 |
| MIMAT0033152 | ppc-miR-8311-5p | 2 | ......._ | 8 | 87 |
| MIMAT0011897 | bta-miR-2359 | 1 | ......._ | 7 | 87 |
| MIMAT0023320 | hco-miR-5886a | 8 | ......t. | 1 | 87 |
| MIMAT0019649 | pma-miR-4615 | 1 | ......t. | 8 | 87 |
| MIMAT0036841 | oha-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036836 | oha-miR-218-5p | 1 | __...... | 6 | 75 |
| MIMAT0036551 | tch-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036514 | tch-miR-218-5p | 1 | __...... | 6 | 75 |
| MIMAT0036134 | chi-miR-323b | 6 | _......_ | 1 | 75 |
| MIMAT0036067 | chi-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0036066 | chi-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0035551 | dvi-miR-1002-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035450 | sly-miR9472-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035390 | nve-miR-9430 | 3 | ......__ | 8 | 75 |
| MIMAT0035264 | gsa-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035068 | efu-miR-218b | 1 | __...... | 6 | 75 |
| MIMAT0035056 | efu-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0035036 | efu-miR-218a | 1 | __...... | 6 | 75 |
| MIMAT0034763 | eca-miR-9182 | 8 | __...... | 3 | 75 |
| MIMAT0034667 | eca-miR-9118 | 7 | _......_ | 2 | 75 |
| MIMAT0034144 | gra-miR8771b | 2 | ......__ | 7 | 75 |
| MIMAT0034143 | gra-miR8771a | 2 | ......__ | 7 | 75 |
| MIMAT0033599 | sma-miR-7-3p | 8 | ......__ | 3 | 75 |
| MIMAT0033504 | sma-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0033074 | ppc-miR-8304b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032907 | ppc-miR-8230-3p | 8 | __...... | 3 | 75 |
| MIMAT0032530 | ssa-miR-219c-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032528 | ssa-miR-219b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032526 | ssa-miR-219a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032524 | ssa-miR-218-5p | 1 | __...... | 6 | 75 |
| MIMAT0031650 | bbe-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031526 | ppe-miR8123-3p | 1 | __...... | 6 | 75 |
| MIMAT0030372 | ptc-miR7814 | 3 | ......__ | 8 | 75 |
| MIMAT0030329 | bdi-miR7786-3p | 7 | __...... | 2 | 75 |
| MIMAT0030147 | bdi-miR7712-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030145 | bdi-miR7711-3p.1 | 2 | ......__ | 7 | 75 |
| MIMAT0030045 | oar-miR-218a | 1 | __...... | 6 | 75 |
| MIMAT0029975 | mtr-miR2664b | 2 | _......_ | 7 | 75 |
| MIMAT0032215 | lva-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032214 | lva-miR-210-3p | 1 | __...... | 6 | 75 |
| MIMAT0032168 | pmi-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032167 | pmi-miR-210-3p | 1 | __...... | 6 | 75 |
| MIMAT0029779 | cbn-miR-784 | 8 | __...... | 3 | 75 |
| MIMAT0029473 | ipu-miR-218b | 1 | __...... | 6 | 75 |
| MIMAT0029472 | ipu-miR-218a | 1 | __...... | 6 | 75 |
| MIMAT0028487 | mdo-miR-7260-3p | 8 | _......_ | 3 | 75 |
| MIMAT0026272 | ccr-miR-218b | 1 | __...... | 6 | 75 |
| MIMAT0026271 | ccr-miR-218a | 1 | __...... | 6 | 75 |
| MIMAT0027955 | mmu-miR-7025-3p | 8 | __...... | 3 | 75 |
| MIMAT0027907 | mmu-miR-7002-3p | 1 | __...... | 6 | 75 |
| MIMAT0027740 | mmu-miR-6920-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027433 | hsa-miR-6766-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025726 | gga-miR-6630-3p | 8 | __...... | 3 | 75 |
| MIMAT0025446 | pol-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025371 | ssc-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0025212 | ptc-miR6473 | 8 | _......_ | 3 | 75 |
| MIMAT0025098 | mmu-miR-6355 | 6 | _......_ | 1 | 75 |
| MIMAT0024979 | hme-miR-3286 | 1 | __...... | 6 | 75 |
| MIMAT0024947 | hme-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0024421 | mse-miR-3286 | 1 | __...... | 6 | 75 |
| MIMAT0024420 | mse-miR-210 | 2 | __...... | 7 | 75 |
| MIMAT0023855 | cgr-miR-218a | 1 | __...... | 6 | 75 |
| MIMAT0023248 | gma-miR5674b | 3 | _......_ | 8 | 75 |
| MIMAT0022768 | sko-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0022609 | ola-miR-218b | 1 | __...... | 6 | 75 |
| MIMAT0022529 | ola-miR-218a | 1 | __...... | 6 | 75 |
| MIMAT0023071 | tur-miR-210-3p | 1 | __...... | 6 | 75 |
| MIMAT0022459 | gma-miR5674a | 3 | _......_ | 8 | 75 |
| MIMAT0022422 | ath-miR5651 | 1 | __...... | 6 | 75 |
| MIMAT0022176 | osa-miR5540 | 1 | __...... | 6 | 75 |
| MIMAT0022003 | aca-miR-5396a | 8 | __...... | 3 | 75 |
| MIMAT0021884 | aca-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021880 | aca-miR-218-5p | 1 | __...... | 6 | 75 |
| MIMAT0020589 | ssc-miR-218b | 1 | __...... | 6 | 75 |
| MIMAT0020271 | emu-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0020246 | egr-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0020122 | xbo-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0019945 | hsa-miR-4782-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019531 | pma-miR-218b | 1 | __...... | 6 | 75 |
| MIMAT0019529 | pma-miR-218a-5p | 1 | __...... | 6 | 75 |
| MIMAT0019335 | oar-miR-323c | 6 | _......_ | 1 | 75 |
| MIMAT0018963 | hsa-miR-4445-5p | 2 | ......__ | 7 | 75 |
| MIMAT0018426 | nlo-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0018399 | ngi-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0018391 | ngi-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0018261 | gma-miR4380a | 3 | ......__ | 8 | 75 |
| MIMAT0018764 | tca-miR-3854-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018735 | tca-miR-3844-3p | 1 | _......_ | 6 | 75 |
| MIMAT0018709 | tca-miR-3837-3p | 3 | ......__ | 8 | 75 |
| MIMAT0022961 | ssc-miR-218-5p | 1 | __...... | 6 | 75 |
| MIMAT0016920 | hsa-miR-4289 | 3 | _......_ | 8 | 75 |
| MIMAT0016794 | cin-miR-4181-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016579 | cin-miR-4045-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017890 | rno-miR-3590-3p | 8 | __...... | 3 | 75 |
| MIMAT0016267 | sja-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0015932 | ppy-miR-508-3p | 2 | ......__ | 7 | 75 |
| MIMAT0015804 | ppy-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0015695 | nvi-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0015690 | nvi-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0017763 | esi-miR3469-5p | 7 | ......__ | 2 | 75 |
| MIMAT0015598 | bmo-miR-3394 | 7 | ......__ | 2 | 75 |
| MIMAT0015473 | bmo-miR-3286-3p | 1 | __...... | 6 | 75 |
| MIMAT0014880 | mmu-miR-3086-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014717 | api-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0014716 | api-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0014568 | tgu-miR-219a | 2 | ......__ | 7 | 75 |
| MIMAT0014522 | tgu-miR-218-5p | 1 | __...... | 6 | 75 |
| MIMAT0014397 | cqu-miR-210-3p | 2 | __...... | 7 | 75 |
| MIMAT0014307 | aae-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0014293 | aae-miR-210 | 2 | __...... | 7 | 75 |
| MIMAT0019188 | rlcv-miR-rL1-21-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015321 | zma-miR166n-5p | 2 | ......__ | 7 | 75 |
| MIMAT0013232 | eca-miR-508-3p | 2 | ......__ | 7 | 75 |
| MIMAT0013099 | eca-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012928 | eca-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0012834 | rno-miR-592 | 1 | _......_ | 6 | 75 |
| MIMAT0013768 | bmo-miR-2847 | 2 | _......_ | 7 | 75 |
| MIMAT0012690 | isc-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0012645 | dpu-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0013471 | mtr-miR2664a | 2 | _......_ | 7 | 75 |
| MIMAT0012283 | dps-miR-210b | 1 | __...... | 6 | 75 |
| MIMAT0012248 | dps-miR-1002-3p | 3 | _......_ | 8 | 75 |
| MIMAT0011908 | bta-miR-1814b | 2 | ......__ | 7 | 75 |
| MIMAT0011673 | ppc-miR-2244 | 7 | _......_ | 2 | 75 |
| MIMAT0011575 | crm-miR-784-5p | 8 | __...... | 3 | 75 |
| MIMAT0011311 | dre-miR-2189 | 2 | ......__ | 7 | 75 |
| MIMAT0011259 | sme-miR-2164-3p | 1 | __...... | 6 | 75 |
| MIMAT0010143 | lmi-miR-210-3p | 2 | __...... | 7 | 75 |
| MIMAT0010019 | ppt-miR2085 | 6 | ......__ | 1 | 75 |
| MIMAT0010012 | bfl-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0009918 | cfa-miR-592 | 1 | _......_ | 6 | 75 |
| MIMAT0009764 | nve-miR-2024c-3p | 8 | __...... | 3 | 75 |
| MIMAT0009685 | spu-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0009646 | spu-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0009636 | sko-miR-210-3p | 1 | __...... | 6 | 75 |
| MIMAT0009556 | cte-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0009534 | cte-miR-210a | 2 | __...... | 7 | 75 |
| MIMAT0009353 | bta-miR-592 | 1 | _......_ | 6 | 75 |
| MIMAT0009269 | bta-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0009107 | dya-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0009095 | dya-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0009020 | dwi-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0009012 | dwi-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0008978 | dvi-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0008928 | dvi-miR-210-3p | 1 | __...... | 6 | 75 |
| MIMAT0008868 | dsi-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0008849 | dsi-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0008824 | dse-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0008776 | dse-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0008719 | dpe-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0008704 | dpe-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0008667 | dmo-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0008638 | dmo-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0008613 | dgr-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0008561 | dgr-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0008552 | der-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0008546 | der-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0008474 | dan-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0008433 | dan-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0008377 | tca-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0008376 | tca-miR-210-3p | 1 | __...... | 6 | 75 |
| MIMAT0009193 | ptr-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0007903 | bmo-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0006672 | cfa-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0006611 | cfa-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0006245 | mml-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0007514 | gga-miR-1639 | 1 | __...... | 6 | 75 |
| MIMAT0006137 | csa-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0015264 | cin-miR-219-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006113 | cin-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0015251 | cin-miR-7-3p | 8 | ......__ | 3 | 75 |
| MIMAT0006084 | odi-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0006033 | odi-miR-1481 | 7 | _......_ | 2 | 75 |
| MIMAT0006899 | oan-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0006815 | oan-miR-218-5p | 1 | __...... | 6 | 75 |
| MIMAT0005781 | pbi-miR-508 | 2 | ......__ | 7 | 75 |
| MIMAT0005772 | ptr-miR-508 | 2 | ......__ | 7 | 75 |
| MIMAT0005764 | mml-miR-508-3p | 2 | ......__ | 7 | 75 |
| MIMAT0005754 | ssy-miR-508 | 2 | ......__ | 7 | 75 |
| MIMAT0005742 | age-miR-508 | 2 | ......__ | 7 | 75 |
| MIMAT0005401 | cre-miR1153-3p.1 | 1 | ......__ | 6 | 75 |
| MIMAT0005156 | ppt-miR1044-5p | 6 | __...... | 1 | 75 |
| MIMAT0004285 | cbr-miR-784 | 8 | __...... | 3 | 75 |
| MIMAT0004134 | mdo-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004133 | mdo-miR-218-5p | 1 | __...... | 6 | 75 |
| MIMAT0004219 | cel-miR-784-5p | 8 | __...... | 3 | 75 |
| MIMAT0004006 | sme-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022932 | ptc-miR403c-5p | 2 | __...... | 7 | 75 |
| MIMAT0003798 | bta-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0003632 | xtr-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0003631 | xtr-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0003730 | mmu-miR-592-5p | 1 | _......_ | 6 | 75 |
| MIMAT0009206 | hsa-miR-2113 | 3 | __...... | 8 | 75 |
| MIMAT0003418 | ebv-miR-BART8-3p | 8 | _......_ | 3 | 75 |
| MIMAT0002994 | tni-miR-218a | 1 | __...... | 6 | 75 |
| MIMAT0002993 | fru-miR-218a | 1 | __...... | 6 | 75 |
| MIMAT0002986 | tni-miR-218b | 1 | __...... | 6 | 75 |
| MIMAT0002985 | fru-miR-218b | 1 | __...... | 6 | 75 |
| MIMAT0002901 | tni-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0002900 | fru-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0002880 | hsa-miR-508-3p | 2 | ......__ | 7 | 75 |
| MIMAT0002577 | ppy-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0002576 | ggo-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0002575 | mml-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0002574 | mml-miR-218-5p | 1 | __...... | 6 | 75 |
| MIMAT0002573 | mne-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0002572 | lla-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0002571 | sla-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0002570 | ptr-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0002569 | ppy-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0002568 | lca-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0002567 | ppa-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0002566 | age-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0002565 | ggo-miR-218 | 1 | __...... | 6 | 75 |
| MIMAT0001869 | dre-miR-218b | 1 | __...... | 6 | 75 |
| MIMAT0001868 | dre-miR-218a | 1 | __...... | 6 | 75 |
| MIMAT0015184 | zma-miR166k-5p | 2 | ......__ | 7 | 75 |
| MIMAT0001606 | osa-miR443 | 8 | _......_ | 3 | 75 |
| MIMAT0001506 | aga-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0001505 | aga-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0001478 | ame-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0001477 | ame-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0001286 | dre-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0001234 | dps-miR-219 | 2 | ......__ | 7 | 75 |
| MIMAT0001233 | dps-miR-210a | 1 | __...... | 6 | 75 |
| MIMAT0001170 | gga-miR-219a | 2 | ......__ | 7 | 75 |
| MIMAT0001144 | gga-miR-218-5p | 1 | __...... | 6 | 75 |
| MIMAT0022871 | osa-miR166l-5p | 2 | ......__ | 7 | 75 |
| MIMAT0000889 | rno-miR-219a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0000888 | rno-miR-218a-5p | 1 | __...... | 6 | 75 |
| MIMAT0000664 | mmu-miR-219a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0000663 | mmu-miR-218-5p | 1 | __...... | 6 | 75 |
| MIMAT0000355 | dme-miR-210-3p | 2 | __...... | 7 | 75 |
| MIMAT0000335 | dme-miR-219-5p | 2 | ......__ | 7 | 75 |
| MIMAT0000276 | hsa-miR-219a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0000275 | hsa-miR-218-5p | 1 | __...... | 6 | 75 |
| MIMAT0015110 | cel-miR-84-3p | 6 | _......_ | 1 | 75 |
