| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcacacg | 7 | ||
| MIMAT0025306 | prv-miR-LLT3 | 2 | ....... | 8 | 100 |
| MIMAT0024834 | hvu-miR6206 | 2 | ....... | 8 | 100 |
| MIMAT0003483 | mmu-miR-696 | 8 | ....... | 2 | 100 |
| MIMAT0036732 | oha-miR-147-3p | 6 | ......_ | 1 | 85 |
| MIMAT0036512 | tch-miR-147b | 6 | ......_ | 1 | 85 |
| MIMAT0035975 | chi-miR-147-3p | 6 | ......_ | 1 | 85 |
| MIMAT0034532 | eca-miR-8986b | 8 | ......_ | 3 | 85 |
| MIMAT0034523 | eca-miR-8986a | 8 | ......_ | 3 | 85 |
| MIMAT0033700 | pxy-miR-8492 | 3 | _...... | 8 | 85 |
| MIMAT0031333 | stu-miR398b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0032227 | lva-miR-2006-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032180 | pmi-miR-2006-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029027 | oan-miR-7436-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028681 | mdo-miR-7336-3p | 3 | ......_ | 8 | 85 |
| MIMAT0025527 | hhi-miR-147b | 6 | ......_ | 1 | 85 |
| MIMAT0023777 | cgr-miR-147 | 6 | ......_ | 1 | 85 |
| MIMAT0021779 | aca-miR-147 | 6 | ......_ | 1 | 85 |
| MIMAT0021571 | asu-miR-5355-3p | 6 | ......_ | 1 | 85 |
| MIMAT0021146 | mtr-miR5213-5p | 8 | _...... | 3 | 85 |
| MIMAT0020631 | mmu-miR-466q | 3 | ......_ | 8 | 85 |
| MIMAT0020160 | dme-miR-4949-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020048 | sko-miR-2006-3p | 3 | ......_ | 8 | 85 |
| MIMAT0019600 | pma-miR-4568 | 3 | ......_ | 8 | 85 |
| MIMAT0019522 | pma-miR-210 | 6 | ......_ | 1 | 85 |
| MIMAT0019480 | pma-miR-147 | 6 | ......_ | 1 | 85 |
| MIMAT0018626 | tca-miR-3804b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018624 | tca-miR-3804a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018010 | vvi-miR2950-3p | 8 | ......_ | 3 | 85 |
| MIMAT0016082 | ppy-miR-648 | 8 | ......_ | 3 | 85 |
| MIMAT0015770 | ppy-miR-147b | 6 | ......_ | 1 | 85 |
| MIMAT0014893 | mmu-miR-466n-5p | 8 | ......_ | 3 | 85 |
| MIMAT0014606 | tgu-miR-147 | 6 | ......_ | 1 | 85 |
| MIMAT0014348 | ghr-miR2950 | 8 | ......_ | 3 | 85 |
| MIMAT0014280 | aae-miR-988-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012908 | eca-miR-147b | 6 | ......_ | 1 | 85 |
| MIMAT0012757 | mdo-miR-147b | 6 | ......_ | 1 | 85 |
| MIMAT0012201 | dme-miR-2493-3p | 7 | _...... | 2 | 85 |
| MIMAT0011966 | bta-miR-2408 | 8 | _...... | 3 | 85 |
| MIMAT0009874 | cfa-miR-147 | 6 | ......_ | 1 | 85 |
| MIMAT0009747 | spu-miR-2006 | 3 | ......_ | 8 | 85 |
| MIMAT0009237 | bta-miR-147 | 6 | ......_ | 1 | 85 |
| MIMAT0008040 | ptr-miR-147b | 6 | ......_ | 1 | 85 |
| MIMAT0006486 | mml-miR-648 | 8 | ......_ | 3 | 85 |
| MIMAT0006207 | mml-miR-147b | 6 | ......_ | 1 | 85 |
| MIMAT0006140 | mdo-miR-1541 | 8 | ......_ | 3 | 85 |
| MIMAT0005958 | osa-miR1424 | 3 | ......_ | 8 | 85 |
| MIMAT0007003 | oan-miR-147 | 6 | ......_ | 1 | 85 |
| MIMAT0005844 | mmu-miR-466f | 7 | _...... | 2 | 85 |
| MIMAT0005297 | rno-miR-147 | 6 | ......_ | 1 | 85 |
| MIMAT0004928 | hsa-miR-147b | 6 | ......_ | 1 | 85 |
| MIMAT0004881 | mmu-miR-466f-5p | 8 | _...... | 3 | 85 |
| MIMAT0004857 | mmu-miR-147-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003422 | ebv-miR-BART11-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003352 | gga-miR-147 | 6 | ......_ | 1 | 85 |
| MIMAT0003318 | hsa-miR-648 | 8 | ......_ | 3 | 85 |
