| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gccaccga | 8 | ||
| MIMAT0036758 | oha-miR-181a-1-3p | 2 | _....... | 8 | 87 |
| MIMAT0035295 | gsa-miR-278-3p | 8 | _....... | 2 | 87 |
| MIMAT0035008 | efu-miR-181f | 2 | _....... | 8 | 87 |
| MIMAT0034616 | eca-miR-9071 | 2 | ......._ | 8 | 87 |
| MIMAT0034172 | gra-miR8748 | 7 | _....... | 1 | 87 |
| MIMAT0031659 | bbe-miR-278-5p | 7 | _....... | 1 | 87 |
| MIMAT0032219 | lva-miR-278-3p | 7 | _....... | 1 | 87 |
| MIMAT0032172 | pmi-miR-278-3p | 7 | _....... | 1 | 87 |
| MIMAT0031027 | oan-miR-181a-3-3p | 1 | _....... | 7 | 87 |
| MIMAT0024960 | hme-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0024451 | mse-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0023051 | tur-miR-5730-3p | 7 | ......._ | 1 | 87 |
| MIMAT0023031 | tur-miR-278-3p | 7 | _....... | 1 | 87 |
| MIMAT0020207 | dme-miR-4976-3p | 7 | _....... | 1 | 87 |
| MIMAT0016930 | isc-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0014723 | api-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0014377 | cqu-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0014238 | aae-miR-278-3p | 7 | _....... | 1 | 87 |
| MIMAT0017375 | ssc-miR-181d-3p | 2 | _....... | 8 | 87 |
| MIMAT0013759 | bmo-miR-2774c | 8 | _....... | 2 | 87 |
| MIMAT0013658 | bmo-miR-2774a | 8 | _....... | 2 | 87 |
| MIMAT0012653 | dpu-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0010135 | bfl-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0009674 | spu-miR-278-3p | 7 | _....... | 1 | 87 |
| MIMAT0009640 | sko-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0009592 | lgi-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0009538 | cte-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0009164 | bmo-miR-278-3p | 7 | _....... | 1 | 87 |
| MIMAT0009086 | dya-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0009029 | dwi-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0008937 | dvi-miR-278-3p | 7 | _....... | 1 | 87 |
| MIMAT0008891 | dsi-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0008781 | dse-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0008726 | dpe-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0008676 | dmo-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0008597 | dgr-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0008530 | der-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0008470 | dan-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0004407 | rrv-miR-rR1-1-3p | 2 | ......._ | 8 | 87 |
| MIMAT0004011 | sme-miR-278-3p | 7 | _....... | 1 | 87 |
| MIMAT0001511 | aga-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0001482 | ame-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0001242 | dps-miR-278 | 7 | _....... | 1 | 87 |
| MIMAT0000339 | dme-miR-278-3p | 7 | _....... | 1 | 87 |
| MIMAT0020342 | cel-miR-259-3p | 1 | _....... | 7 | 87 |
| MIMAT0027630 | hsa-miR-6865-5p | 8 | ......t. | 1 | 87 |
| MIMAT0027530 | hsa-miR-6815-5p | 8 | ......t. | 1 | 87 |
| MIMAT0025705 | gga-miR-6610-3p | 8 | ......c. | 1 | 87 |
| MIMAT0004274 | ath-miR851-3p | 8 | ......c. | 1 | 87 |
| MIMAT0035394 | nve-miR-9433 | 7 | __...... | 2 | 75 |
| MIMAT0035144 | efu-miR-9186i | 7 | ......__ | 2 | 75 |
| MIMAT0035091 | efu-miR-9186o | 8 | ......__ | 3 | 75 |
| MIMAT0035029 | efu-miR-411 | 7 | _......_ | 2 | 75 |
| MIMAT0034959 | efu-miR-9186q | 8 | ......__ | 3 | 75 |
| MIMAT0034526 | eca-miR-8989 | 8 | ......__ | 3 | 75 |
| MIMAT0034406 | cfa-miR-449b | 3 | ......__ | 8 | 75 |
| MIMAT0033895 | atr-miR8606 | 2 | __...... | 7 | 75 |
| MIMAT0033645 | sma-miR-8463-5p | 7 | __...... | 2 | 75 |
| MIMAT0033515 | sma-miR-36b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0033435 | str-miR-8387-3p | 2 | __...... | 7 | 75 |
| MIMAT0030998 | hsa-miR-8071 | 6 | _......_ | 1 | 75 |
| MIMAT0030890 | stu-miR8000 | 2 | __...... | 7 | 75 |
| MIMAT0030531 | prd-miR-36-3p | 1 | _......_ | 6 | 75 |
| MIMAT0029850 | mmu-miR-7672-5p | 6 | _......_ | 1 | 75 |
| MIMAT0029543 | ipu-miR-7549 | 8 | __...... | 3 | 75 |
| MIMAT0029339 | lja-miR7523b | 2 | _......_ | 7 | 75 |
| MIMAT0029338 | lja-miR7523a | 2 | _......_ | 7 | 75 |
| MIMAT0029096 | gga-miR-7471-5p | 7 | __...... | 2 | 75 |
| MIMAT0029040 | gga-miR-7443-5p | 7 | ......__ | 2 | 75 |
| MIMAT0031048 | mdo-miR-181b-3-3p | 2 | __...... | 7 | 75 |
| MIMAT0028277 | mml-miR-7171-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027985 | mmu-miR-7040-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027978 | mmu-miR-7037-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027848 | mmu-miR-6973a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027472 | hsa-miR-6786-5p | 7 | _......_ | 2 | 75 |
| MIMAT0025477 | hsa-miR-6510-3p | 1 | __...... | 6 | 75 |
| MIMAT0025041 | sma-miR-36a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0024796 | hbr-miR6175 | 7 | ......__ | 2 | 75 |
| MIMAT0023804 | cgr-miR-181d-3p | 2 | _......_ | 7 | 75 |
| MIMAT0020149 | dme-miR-4941-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020051 | sko-miR-4835-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019825 | hsa-miR-4715-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018882 | tca-miR-3791-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018690 | tca-miR-3830-5p | 7 | __...... | 2 | 75 |
| MIMAT0016389 | gga-miR-3538 | 8 | __...... | 3 | 75 |
| MIMAT0016258 | sja-miR-36-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016093 | ppy-miR-663b | 6 | ......__ | 1 | 75 |
| MIMAT0017756 | esi-miR3455-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017706 | aly-miR3437-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015489 | bmo-miR-3301 | 7 | __...... | 2 | 75 |
| MIMAT0013712 | bmo-miR-2808a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0011790 | dme-miR-2282-3p | 7 | __...... | 2 | 75 |
| MIMAT0009755 | nve-miR-2023-5p | 3 | ......__ | 8 | 75 |
| MIMAT0009402 | mmu-miR-1938 | 6 | _......_ | 1 | 75 |
| MIMAT0008310 | ptr-miR-663b | 6 | ......__ | 1 | 75 |
| MIMAT0007764 | osa-miR1846d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007662 | gga-miR-1755 | 6 | __...... | 1 | 75 |
| MIMAT0006032 | odi-miR-1480 | 6 | ......__ | 1 | 75 |
| MIMAT0007088 | oan-miR-1421u-5p | 7 | ......__ | 2 | 75 |
| MIMAT0007014 | oan-miR-449b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005867 | hsa-miR-663b | 6 | ......__ | 1 | 75 |
| MIMAT0017296 | rno-miR-181d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005211 | ppt-miR1079-5p | 1 | __...... | 6 | 75 |
| MIMAT0017264 | mmu-miR-181d-3p | 2 | _......_ | 7 | 75 |
| MIMAT0004817 | ebv-miR-BART10-5p | 1 | ......__ | 6 | 75 |
| MIMAT0003166 | mmu-miR-546 | 8 | ......__ | 3 | 75 |
| MIMAT0026608 | hsa-miR-181d-3p | 1 | _......_ | 6 | 75 |
