| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcctgcc | 7 | ||
| MIMAT0019912 | hsa-miR-4763-5p | 2 | ....... | 8 | 100 |
| MIMAT0015328 | zma-miR169q-3p | 7 | ....... | 1 | 100 |
| MIMAT0015325 | zma-miR169n-3p | 7 | ....... | 1 | 100 |
| MIMAT0034931 | efu-miR-370 | 1 | ......_ | 6 | 85 |
| MIMAT0034712 | eca-miR-8908l | 1 | _...... | 6 | 85 |
| MIMAT0034391 | cfa-miR-8887 | 2 | _...... | 7 | 85 |
| MIMAT0032795 | cel-miR-8191-5p | 3 | _...... | 8 | 85 |
| MIMAT0032645 | ssa-miR-456-5p | 6 | ......_ | 1 | 85 |
| MIMAT0029664 | cbn-miR-789a | 2 | _...... | 7 | 85 |
| MIMAT0031130 | sly-miR168a-3p | 1 | _...... | 6 | 85 |
| MIMAT0028975 | oan-miR-7413-3p | 6 | _...... | 1 | 85 |
| MIMAT0028694 | mdo-miR-7342-5p | 1 | _...... | 6 | 85 |
| MIMAT0028211 | hsa-miR-7150 | 8 | _...... | 3 | 85 |
| MIMAT0028080 | mmu-miR-7087-5p | 7 | _...... | 2 | 85 |
| MIMAT0028045 | mmu-miR-7069-3p | 1 | _...... | 6 | 85 |
| MIMAT0027937 | mmu-miR-7016-3p | 2 | _...... | 7 | 85 |
| MIMAT0027904 | mmu-miR-7001-5p | 7 | _...... | 2 | 85 |
| MIMAT0027689 | hsa-miR-6894-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027686 | hsa-miR-6893-5p | 8 | _...... | 3 | 85 |
| MIMAT0027522 | hsa-miR-6811-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027516 | hsa-miR-6808-5p | 8 | _...... | 3 | 85 |
| MIMAT0027405 | hsa-miR-6752-3p | 3 | _...... | 8 | 85 |
| MIMAT0027395 | hsa-miR-6747-3p | 2 | _...... | 7 | 85 |
| MIMAT0027356 | hsa-miR-6727-3p | 2 | _...... | 7 | 85 |
| MIMAT0025852 | hsa-miR-6721-5p | 8 | _...... | 3 | 85 |
| MIMAT0025847 | hsa-miR-6511b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025638 | gga-miR-6566-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025373 | ssc-miR-370 | 1 | ......_ | 6 | 85 |
| MIMAT0025067 | rno-miR-6328 | 3 | ......_ | 8 | 85 |
| MIMAT0024404 | ppy-miR-1976 | 3 | _...... | 8 | 85 |
| MIMAT0024385 | ppy-miR-1273e | 8 | _...... | 3 | 85 |
| MIMAT0027108 | mml-miR-1271-3p | 3 | ......_ | 8 | 85 |
| MIMAT0024213 | ggo-miR-940 | 8 | _...... | 3 | 85 |
| MIMAT0024182 | ggo-miR-370 | 1 | ......_ | 6 | 85 |
| MIMAT0023747 | cgr-miR-1271 | 3 | ......_ | 8 | 85 |
| MIMAT0022390 | ath-miR5631 | 7 | _...... | 2 | 85 |
| MIMAT0027073 | bdi-miR169c-3p | 6 | _...... | 1 | 85 |
| MIMAT0019913 | hsa-miR-4763-3p | 7 | _...... | 2 | 85 |
| MIMAT0019862 | hsa-miR-4736 | 7 | _...... | 2 | 85 |
| MIMAT0019837 | hsa-miR-4722-3p | 2 | _...... | 7 | 85 |
| MIMAT0019836 | hsa-miR-4722-5p | 6 | _...... | 1 | 85 |
| MIMAT0019779 | hsa-miR-4690-5p | 8 | ......_ | 3 | 85 |
| MIMAT0019244 | oar-miR-370-3p | 1 | ......_ | 6 | 85 |
| MIMAT0016897 | hsa-miR-4269 | 6 | ......_ | 1 | 85 |
| MIMAT0017917 | aly-miR4229 | 8 | _...... | 3 | 85 |
| MIMAT0016453 | cin-miR-4001d-3p | 1 | ......_ | 6 | 85 |
| MIMAT0016155 | ppy-miR-1207-5p | 7 | _...... | 2 | 85 |
| MIMAT0016073 | ppy-miR-634 | 3 | _...... | 8 | 85 |
| MIMAT0016038 | ppy-miR-596 | 3 | ......_ | 8 | 85 |
| MIMAT0015857 | ppy-miR-370 | 1 | ......_ | 6 | 85 |
| MIMAT0026964 | tgu-miR-456-5p | 6 | ......_ | 1 | 85 |
| MIMAT0015326 | zma-miR169o-3p | 6 | _...... | 1 | 85 |
| MIMAT0013142 | eca-miR-370 | 1 | ......_ | 6 | 85 |
| MIMAT0012807 | ptr-miR-596 | 3 | ......_ | 8 | 85 |
| MIMAT0012027 | bta-miR-2449 | 8 | _...... | 3 | 85 |
| MIMAT0011898 | bta-miR-2360 | 8 | _...... | 3 | 85 |
| MIMAT0011889 | bta-miR-2353 | 3 | ......_ | 8 | 85 |
| MIMAT0011402 | sme-miR-2206-5p | 8 | _...... | 3 | 85 |
| MIMAT0009889 | cfa-miR-370 | 1 | ......_ | 6 | 85 |
| MIMAT0009300 | bta-miR-370 | 1 | ......_ | 6 | 85 |
| MIMAT0008347 | ptr-miR-940 | 8 | _...... | 3 | 85 |
| MIMAT0008306 | ptr-miR-657 | 6 | _...... | 1 | 85 |
| MIMAT0008120 | ptr-miR-370 | 1 | ......_ | 6 | 85 |
| MIMAT0006541 | mml-miR-940 | 8 | _...... | 3 | 85 |
| MIMAT0006498 | mml-miR-657 | 6 | _...... | 1 | 85 |
| MIMAT0006295 | mml-miR-370-3p | 1 | ......_ | 6 | 85 |
| MIMAT0007724 | gga-miR-1806 | 7 | _...... | 2 | 85 |
| MIMAT0007669 | gga-miR-1762 | 6 | _...... | 1 | 85 |
| MIMAT0007491 | gga-miR-1623 | 6 | ......_ | 1 | 85 |
| MIMAT0006989 | oan-miR-155-3p | 3 | _...... | 8 | 85 |
| MIMAT0005871 | hsa-miR-1207-5p | 7 | _...... | 2 | 85 |
| MIMAT0004983 | hsa-miR-940 | 8 | _...... | 3 | 85 |
| MIMAT0022934 | mtr-miR169e-3p | 6 | _...... | 1 | 85 |
| MIMAT0022933 | mtr-miR169d-3p | 6 | _...... | 1 | 85 |
| MIMAT0004291 | cbr-miR-789 | 3 | _...... | 8 | 85 |
| MIMAT0004224 | cel-miR-789-3p | 3 | _...... | 8 | 85 |
| MIMAT0003719 | ebv-miR-BART20-5p | 8 | ......_ | 3 | 85 |
| MIMAT0003467 | mmu-miR-688 | 8 | ......_ | 3 | 85 |
| MIMAT0003447 | rlcv-miR-rL1-16-5p | 8 | ......_ | 3 | 85 |
| MIMAT0003335 | hsa-miR-657 | 6 | _...... | 1 | 85 |
| MIMAT0003264 | hsa-miR-596 | 3 | ......_ | 8 | 85 |
| MIMAT0003122 | rno-miR-370-3p | 1 | ......_ | 6 | 85 |
| MIMAT0026593 | mml-miR-15a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022898 | ptc-miR169b-3p | 6 | _...... | 1 | 85 |
| MIMAT0001095 | mmu-miR-370-3p | 1 | ......_ | 6 | 85 |
| MIMAT0000722 | hsa-miR-370-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017039 | mmu-miR-346-3p | 7 | _...... | 2 | 85 |
