| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcgaacc | 7 | ||
| MIMAT0028200 | dev-miR-D23-3p | 2 | ....... | 8 | 100 |
| MIMAT0007489 | gga-miR-1621-3p | 7 | ....... | 1 | 100 |
| MIMAT0017187 | mghv-miR-M1-3-5p | 2 | ....... | 8 | 100 |
| MIMAT0034915 | efu-miR-9277 | 6 | _...... | 1 | 85 |
| MIMAT0034487 | eca-miR-329b | 3 | _...... | 8 | 85 |
| MIMAT0032400 | ssa-miR-15c-2-3p | 1 | _...... | 6 | 85 |
| MIMAT0030915 | stu-miR8018 | 2 | _...... | 7 | 85 |
| MIMAT0030299 | bdi-miR7774-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021566 | asu-miR-5353-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020574 | osa-miR5077 | 6 | ......_ | 1 | 85 |
| MIMAT0017724 | aly-miR3445-5p.1 | 1 | _...... | 6 | 85 |
| MIMAT0013328 | mtr-miR2614 | 7 | _...... | 2 | 85 |
| MIMAT0011233 | sme-miR-2152 | 7 | _...... | 2 | 85 |
| MIMAT0015282 | dsi-miR-312-5p | 7 | _...... | 2 | 85 |
| MIMAT0020895 | dme-miR-996-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017209 | mmu-miR-541-3p | 3 | ......_ | 8 | 85 |
| MIMAT0001324 | ath-miR416 | 6 | _...... | 1 | 85 |
| MIMAT0000639 | osa-miR166e-3p | 2 | _...... | 7 | 85 |
| MIMAT0020838 | dme-miR-312-5p | 7 | _...... | 2 | 85 |
