| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcgagttc | 8 | ||
| MIMAT0037087 | ata-miR169g-3p | 2 | ......._ | 8 | 87 |
| MIMAT0027068 | bdi-miR169a-3p | 2 | ......._ | 8 | 87 |
| MIMAT0017677 | aly-miR163-5p.1 | 1 | _....... | 7 | 87 |
| MIMAT0027401 | hsa-miR-6750-3p | 8 | .t...... | 1 | 87 |
| MIMAT0036979 | bta-miR-4680 | 7 | __...... | 2 | 75 |
| MIMAT0036978 | bta-miR-4444 | 3 | _......_ | 8 | 75 |
| MIMAT0035695 | bra-miR9563b-5p | 8 | __...... | 3 | 75 |
| MIMAT0035349 | gsa-miR-9394b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0034837 | efu-miR-9230c | 7 | __...... | 2 | 75 |
| MIMAT0034054 | gra-miR8683 | 7 | __...... | 2 | 75 |
| MIMAT0033556 | sma-miR-8426-5p | 2 | ......__ | 7 | 75 |
| MIMAT0033414 | str-miR-76-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033001 | ppc-miR-2253c-5p | 3 | __...... | 8 | 75 |
| MIMAT0031771 | hbv-miR-B26-5p | 2 | __...... | 7 | 75 |
| MIMAT0030770 | prd-miR-7950a-5p | 1 | __...... | 6 | 75 |
| MIMAT0030712 | prd-miR-7950c-5p | 1 | __...... | 6 | 75 |
| MIMAT0029980 | mtr-miR319c-5p | 2 | __...... | 7 | 75 |
| MIMAT0029147 | ghr-miR7500 | 3 | _......_ | 8 | 75 |
| MIMAT0028703 | mdo-miR-7345-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028475 | mdo-miR-7254-3p | 2 | __...... | 7 | 75 |
| MIMAT0027783 | mmu-miR-6941-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027529 | hsa-miR-6814-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025596 | gga-miR-6546-3p | 2 | __...... | 7 | 75 |
| MIMAT0025062 | rno-miR-6323 | 8 | __...... | 3 | 75 |
| MIMAT0024773 | nta-miR6161d | 7 | __...... | 2 | 75 |
| MIMAT0024763 | nta-miR1446 | 7 | __...... | 2 | 75 |
| MIMAT0024726 | nta-miR1919 | 3 | ......__ | 8 | 75 |
| MIMAT0022082 | aca-miR-5455-3p | 1 | __...... | 6 | 75 |
| MIMAT0022072 | aca-miR-5450 | 2 | __...... | 7 | 75 |
| MIMAT0021642 | gma-miR159f-5p | 1 | __...... | 6 | 75 |
| MIMAT0019764 | hsa-miR-4680-5p | 7 | __...... | 2 | 75 |
| MIMAT0019693 | hsa-miR-4636 | 6 | _......_ | 1 | 75 |
| MIMAT0018962 | hsa-miR-4444 | 3 | _......_ | 8 | 75 |
| MIMAT0018496 | csi-miR3953 | 3 | __...... | 8 | 75 |
| MIMAT0018858 | tca-miR-3881-5p | 2 | _......_ | 7 | 75 |
| MIMAT0018688 | tca-miR-3829-5p | 3 | __...... | 8 | 75 |
| MIMAT0017909 | aly-miR4221 | 3 | __...... | 8 | 75 |
| MIMAT0016363 | gso-miR2109 | 2 | ......__ | 7 | 75 |
| MIMAT0015043 | hsa-miR-3168 | 1 | __...... | 6 | 75 |
| MIMAT0014899 | mmu-miR-3089-5p | 2 | __...... | 7 | 75 |
| MIMAT0014241 | aae-miR-11-5p | 7 | __...... | 2 | 75 |
| MIMAT0013610 | bmo-miR-279c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013495 | mtr-miR2674 | 7 | ......__ | 2 | 75 |
| MIMAT0012526 | dsi-miR-983a-3p | 3 | __...... | 8 | 75 |
| MIMAT0012479 | dsi-miR-969-5p | 1 | __...... | 6 | 75 |
| MIMAT0012275 | dps-miR-969-5p | 1 | __...... | 6 | 75 |
| MIMAT0012007 | bta-miR-2435 | 7 | _......_ | 2 | 75 |
| MIMAT0011832 | bta-miR-2284t-3p | 7 | _......_ | 2 | 75 |
| MIMAT0011595 | crm-miR-67-5p | 6 | _......_ | 1 | 75 |
| MIMAT0010203 | hsv2-miR-H4-5p | 1 | __...... | 6 | 75 |
| MIMAT0010086 | gma-miR2109-5p | 2 | ......__ | 7 | 75 |
| MIMAT0007865 | mmu-miR-1897-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020934 | gma-miR159b-5p | 1 | __...... | 6 | 75 |
| MIMAT0005856 | mmu-miR-1195 | 2 | __...... | 7 | 75 |
| MIMAT0005485 | dme-miR-969-5p | 1 | __...... | 6 | 75 |
| MIMAT0003743 | mmu-miR-712-3p | 2 | ......__ | 7 | 75 |
