| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcgcaggg | 8 | ||
| MIMAT0031658 | bbe-miR-252b-3p | 8 | ........ | 1 | 100 |
| MIMAT0028575 | mdo-miR-7295-3p | 8 | ........ | 1 | 100 |
| MIMAT0012710 | hvt-miR-H1 | 1 | ........ | 8 | 100 |
| MIMAT0019151 | bfl-miR-252b-3p | 8 | ........ | 1 | 100 |
| MIMAT0027574 | hsa-miR-6836-5p | 1 | _....... | 7 | 87 |
| MIMAT0025073 | rno-miR-6332 | 1 | _....... | 7 | 87 |
| MIMAT0015590 | bmo-miR-3389-3p | 7 | _....... | 1 | 87 |
| MIMAT0013630 | bmo-miR-2758-3p | 7 | _....... | 1 | 87 |
| MIMAT0007883 | hsa-miR-1909-3p | 1 | _....... | 7 | 87 |
| MIMAT0007401 | hsa-miR-1539 | 8 | ......._ | 2 | 87 |
| MIMAT0036814 | oha-miR-204-2-3p | 1 | __...... | 6 | 75 |
| MIMAT0036643 | oha-let-7i-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036336 | ocu-miR-191-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036084 | chi-miR-2331 | 7 | __...... | 2 | 75 |
| MIMAT0036023 | chi-miR-191-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035895 | chi-let-7i-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035842 | bra-miR391-5p | 3 | _......_ | 8 | 75 |
| MIMAT0034906 | efu-miR-191 | 7 | ......__ | 2 | 75 |
| MIMAT0034739 | eca-miR-9162 | 6 | __...... | 1 | 75 |
| MIMAT0034564 | eca-miR-9022 | 3 | __...... | 8 | 75 |
| MIMAT0034531 | eca-miR-8993 | 3 | __...... | 8 | 75 |
| MIMAT0033802 | pxy-miR-8510a-8-3p | 2 | _......_ | 7 | 75 |
| MIMAT0033735 | pxy-miR-8510b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0033733 | pxy-miR-8510a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032795 | cel-miR-8191-5p | 7 | __...... | 2 | 75 |
| MIMAT0032489 | ssa-miR-204-3p | 1 | __...... | 6 | 75 |
| MIMAT0032276 | ssa-let-7i-2-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032275 | ssa-let-7i-3p | 6 | ......__ | 1 | 75 |
| MIMAT0031534 | ppe-miR3627-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031274 | stu-miR4376-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031245 | stu-miR3627-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031192 | stu-miR8006-3p | 8 | __...... | 3 | 75 |
| MIMAT0030311 | bdi-miR7778-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030201 | bdi-miR7733-3p | 6 | _......_ | 1 | 75 |
| MIMAT0029664 | cbn-miR-789a | 6 | __...... | 1 | 75 |
| MIMAT0031151 | aja-let-7i | 6 | ......__ | 1 | 75 |
| MIMAT0028724 | mdo-miR-7356-5p | 8 | __...... | 3 | 75 |
| MIMAT0028404 | mmu-miR-7218-5p | 2 | __...... | 7 | 75 |
| MIMAT0028350 | mml-miR-7195-5p | 1 | __...... | 6 | 75 |
| MIMAT0026019 | mdm-miR391 | 3 | _......_ | 8 | 75 |
| MIMAT0026018 | mdm-miR3627c | 2 | _......_ | 7 | 75 |
| MIMAT0026017 | mdm-miR3627b | 2 | _......_ | 7 | 75 |
| MIMAT0026016 | mdm-miR3627a | 2 | _......_ | 7 | 75 |
| MIMAT0028038 | mmu-miR-7067-5p | 2 | __...... | 7 | 75 |
| MIMAT0027939 | mmu-miR-7017-3p | 7 | __...... | 2 | 75 |
| MIMAT0027904 | mmu-miR-7001-5p | 3 | __...... | 8 | 75 |
| MIMAT0027883 | mmu-miR-6990-3p | 8 | __...... | 3 | 75 |
| MIMAT0027687 | hsa-miR-6893-3p | 6 | __...... | 1 | 75 |
| MIMAT0027672 | hsa-miR-6886-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027521 | hsa-miR-6810-3p | 8 | __...... | 3 | 75 |
| MIMAT0027503 | hsa-miR-6801-3p | 8 | __...... | 3 | 75 |
| MIMAT0027499 | hsa-miR-6799-3p | 8 | __...... | 3 | 75 |
| MIMAT0027405 | hsa-miR-6752-3p | 7 | __...... | 2 | 75 |
| MIMAT0025854 | hsa-miR-6722-3p | 2 | __...... | 7 | 75 |
| MIMAT0025757 | gga-miR-6656-5p | 2 | __...... | 7 | 75 |
| MIMAT0025476 | hsa-miR-6510-5p | 3 | __...... | 8 | 75 |
| MIMAT0025142 | mmu-miR-6392-3p | 3 | _......_ | 8 | 75 |
| MIMAT0024625 | mml-miR-6132 | 2 | __...... | 7 | 75 |
| MIMAT0024616 | hsa-miR-6132 | 2 | __...... | 7 | 75 |
| MIMAT0024606 | ptr-miR-6132 | 2 | __...... | 7 | 75 |
| MIMAT0024062 | ptr-miR-3193 | 8 | _......_ | 3 | 75 |
| MIMAT0024018 | cgr-miR-6091 | 7 | _......_ | 2 | 75 |
| MIMAT0023823 | cgr-miR-191-3p | 6 | ......__ | 1 | 75 |
| MIMAT0023724 | cgr-let-7i | 6 | ......__ | 1 | 75 |
| MIMAT0023693 | hsa-miR-6068 | 6 | _......_ | 1 | 75 |
| MIMAT0023143 | mtr-miR5225c | 2 | _......_ | 7 | 75 |
| MIMAT0023142 | mtr-miR5225b | 2 | _......_ | 7 | 75 |
| MIMAT0022688 | sly-miR4376 | 2 | _......_ | 7 | 75 |
| MIMAT0021708 | aca-let-7i-3p | 6 | ......__ | 1 | 75 |
| MIMAT0021144 | mtr-miR5211 | 2 | _......_ | 7 | 75 |
| MIMAT0019913 | hsa-miR-4763-3p | 3 | __...... | 8 | 75 |
| MIMAT0019235 | hsa-miR-4520-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018280 | gma-miR4376-5p | 3 | _......_ | 8 | 75 |
| MIMAT0018706 | tca-miR-308-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016373 | gga-miR-3523 | 3 | ......__ | 8 | 75 |
| MIMAT0016155 | ppy-miR-1207-5p | 3 | __...... | 8 | 75 |
| MIMAT0017537 | aly-miR391-5p | 3 | _......_ | 8 | 75 |
| MIMAT0015077 | hsa-miR-3193 | 7 | _......_ | 2 | 75 |
| MIMAT0019214 | hsa-miR-3173-5p | 8 | __...... | 3 | 75 |
| MIMAT0014708 | hsv2-miR-H25 | 6 | ......__ | 1 | 75 |
| MIMAT0014664 | bmo-miR-3000 | 6 | ......__ | 1 | 75 |
| MIMAT0026974 | tgu-let-7i-3p | 6 | ......__ | 1 | 75 |
| MIMAT0012008 | bta-miR-2436-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011864 | bta-miR-2331-3p | 7 | __...... | 2 | 75 |
| MIMAT0011469 | cbr-miR-35d-5p | 1 | _......_ | 6 | 75 |
| MIMAT0011215 | mmu-miR-2139 | 8 | ......__ | 3 | 75 |
| MIMAT0006481 | mml-miR-639 | 2 | ......__ | 7 | 75 |
| MIMAT0026834 | mml-miR-191-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007685 | gga-miR-1774 | 7 | __...... | 2 | 75 |
| MIMAT0006989 | oan-miR-155-3p | 7 | __...... | 2 | 75 |
| MIMAT0006966 | oan-miR-1421b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005871 | hsa-miR-1207-5p | 3 | __...... | 8 | 75 |
| MIMAT0005543 | mcmv-miR-M23-1-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004291 | cbr-miR-789 | 7 | __...... | 2 | 75 |
| MIMAT0004224 | cel-miR-789-3p | 7 | __...... | 2 | 75 |
| MIMAT0005801 | mdv1-miR-M1-3p | 8 | ......__ | 3 | 75 |
| MIMAT0003467 | mmu-miR-688 | 2 | _......_ | 7 | 75 |
| MIMAT0015147 | zma-miR162-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000933 | ath-miR391-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004707 | rno-let-7i-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017039 | mmu-miR-346-3p | 3 | __...... | 8 | 75 |
| MIMAT0001618 | hsa-miR-191-3p | 7 | ......__ | 2 | 75 |
| MIMAT0004585 | hsa-let-7i-3p | 6 | ......__ | 1 | 75 |
| MIMAT0022694 | hsa-miR-211-3p | 1 | __...... | 6 | 75 |
| MIMAT0004520 | mmu-let-7i-3p | 6 | ......__ | 1 | 75 |
