| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcggcgg | 7 | ||
| MIMAT0033770 | pxy-miR-8528b | 1 | ....... | 7 | 100 |
| MIMAT0030999 | hsa-miR-8072 | 2 | ....... | 8 | 100 |
| MIMAT0029104 | gga-miR-7475-5p | 7 | ....... | 1 | 100 |
| MIMAT0025622 | gga-miR-6556-3p | 2 | ....... | 8 | 100 |
| MIMAT0024405 | ppy-miR-2861 | 2 | ....... | 8 | 100 |
| MIMAT0019337 | hsa-miR-3960 | 2 | ....... | 8 | 100 |
| MIMAT0019336 | mmu-miR-3960 | 2 | ....... | 8 | 100 |
| MIMAT0033753 | pxy-miR-8516 | 1 | ......_ | 6 | 85 |
| MIMAT0033748 | pxy-miR-8528a | 3 | ......_ | 8 | 85 |
| MIMAT0027639 | hsa-miR-6869-3p | 6 | ......_ | 1 | 85 |
| MIMAT0024862 | mmu-miR-6241 | 3 | _...... | 8 | 85 |
| MIMAT0026458 | hhv6b-miR-Ro6-2-5p | 6 | ......_ | 1 | 85 |
| MIMAT0026458 | hhv6b-miR-Ro6-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0023023 | bra-miR5724 | 8 | _...... | 3 | 85 |
| MIMAT0021682 | sbi-miR5384 | 8 | ......_ | 3 | 85 |
| MIMAT0021011 | gma-miR4993 | 3 | ......_ | 8 | 85 |
| MIMAT0020158 | dme-miR-4948-5p | 1 | _...... | 6 | 85 |
| MIMAT0020131 | cel-miR-4923b | 3 | _...... | 8 | 85 |
| MIMAT0018994 | hsa-miR-4467 | 3 | ......_ | 8 | 85 |
| MIMAT0016913 | hsa-miR-4285 | 1 | ......_ | 6 | 85 |
| MIMAT0016237 | ppy-miR-1908 | 1 | _...... | 6 | 85 |
| MIMAT0013844 | bta-miR-2886 | 8 | ......_ | 3 | 85 |
| MIMAT0013843 | bta-miR-2885 | 1 | _...... | 6 | 85 |
| MIMAT0011213 | mmu-miR-2137 | 3 | _...... | 8 | 85 |
| MIMAT0010072 | osa-miR2104 | 1 | ......_ | 6 | 85 |
| MIMAT0007881 | hsa-miR-1908-5p | 1 | _...... | 6 | 85 |
| MIMAT0007417 | gga-miR-1560-5p | 1 | ......_ | 6 | 85 |
| MIMAT0005539 | mcmv-miR-m01-4-3p | 6 | ......_ | 1 | 85 |
