| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcgggca | 7 | ||
| MIMAT0013970 | bhv1-miR-B8-5p | 2 | ....... | 8 | 100 |
| MIMAT0012855 | rno-miR-666-5p | 2 | ....... | 8 | 100 |
| MIMAT0003737 | mmu-miR-666-5p | 2 | ....... | 8 | 100 |
| MIMAT0037079 | ssc-miR-9860-5p | 7 | _...... | 2 | 85 |
| MIMAT0034404 | cfa-miR-8896 | 3 | _...... | 8 | 85 |
| MIMAT0032916 | ppc-miR-63j-5p | 8 | ......_ | 3 | 85 |
| MIMAT0031417 | mmu-miR-8111 | 3 | _...... | 8 | 85 |
| MIMAT0029849 | mmu-miR-7671-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028121 | hsa-miR-7112-5p | 2 | _...... | 7 | 85 |
| MIMAT0028070 | mmu-miR-7082-5p | 3 | _...... | 8 | 85 |
| MIMAT0027625 | hsa-miR-6862-5p | 1 | _...... | 6 | 85 |
| MIMAT0022994 | gma-miR169l-3p | 1 | _...... | 6 | 85 |
| MIMAT0020637 | mmu-miR-5126 | 1 | ......_ | 6 | 85 |
| MIMAT0020158 | dme-miR-4948-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016764 | cin-miR-4158-5p | 6 | _...... | 1 | 85 |
| MIMAT0017876 | rno-miR-3584-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016233 | ppy-miR-1471 | 6 | ......_ | 1 | 85 |
| MIMAT0013857 | bta-miR-2899 | 3 | ......_ | 8 | 85 |
| MIMAT0011898 | bta-miR-2360 | 1 | _...... | 6 | 85 |
| MIMAT0009443 | mmu-miR-1946b | 3 | _...... | 8 | 85 |
| MIMAT0007349 | hsa-miR-1471 | 6 | ......_ | 1 | 85 |
| MIMAT0012544 | mdv2-miR-M26-3p | 2 | _...... | 7 | 85 |
| MIMAT0000329 | cel-miR-273 | 6 | _...... | 1 | 85 |
