| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcggtcac | 8 | ||
| MIMAT0005560 | mcmv-miR-m108-2-5p.1 | 1 | ........ | 8 | 100 |
| MIMAT0037137 | ata-miR169c-3p | 2 | ......._ | 8 | 87 |
| MIMAT0005555 | mcmv-miR-m107-1-5p | 1 | _....... | 7 | 87 |
| MIMAT0034978 | efu-miR-9305 | 1 | .t...... | 8 | 87 |
| MIMAT0019581 | pma-miR-4549 | 8 | ......t. | 1 | 87 |
| MIMAT0014854 | mmu-miR-3073a-5p | 1 | .t...... | 8 | 87 |
| MIMAT0003929 | mdv1-miR-M8-3p | 8 | .a...... | 1 | 87 |
| MIMAT0036881 | oha-miR-29a-2-5p | 6 | _......_ | 1 | 75 |
| MIMAT0036116 | chi-miR-29c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0035656 | bra-miR9552b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035280 | gsa-miR-2001-5p | 8 | __...... | 3 | 75 |
| MIMAT0034288 | cfa-miR-8798 | 2 | ......__ | 7 | 75 |
| MIMAT0033542 | sma-miR-8419-5p | 8 | _......_ | 3 | 75 |
| MIMAT0033460 | str-miR-360-5p | 8 | __...... | 3 | 75 |
| MIMAT0033129 | ppc-miR-360-5p | 8 | __...... | 3 | 75 |
| MIMAT0032960 | ppc-miR-8248-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031176 | hsa-miR-7973 | 7 | __...... | 2 | 75 |
| MIMAT0030540 | prd-miR-360-5p | 8 | __...... | 3 | 75 |
| MIMAT0030263 | bdi-miR7758-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029964 | mtr-miR2587g | 7 | _......_ | 2 | 75 |
| MIMAT0032222 | lva-miR-2001-5p | 8 | __...... | 3 | 75 |
| MIMAT0032175 | pmi-miR-2001-5p | 8 | __...... | 3 | 75 |
| MIMAT0029943 | cbn-miR-360 | 8 | __...... | 3 | 75 |
| MIMAT0029923 | crm-miR-360 | 8 | __...... | 3 | 75 |
| MIMAT0029567 | ipu-miR-7568 | 7 | _......_ | 2 | 75 |
| MIMAT0029016 | oan-miR-7433-5p | 2 | __...... | 7 | 75 |
| MIMAT0028895 | mdo-miR-7394b-3p | 7 | __...... | 2 | 75 |
| MIMAT0028885 | mdo-miR-7393-3p | 7 | __...... | 2 | 75 |
| MIMAT0028191 | dev-miR-D17-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027813 | mmu-miR-6956-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027517 | hsa-miR-6808-3p | 8 | __...... | 3 | 75 |
| MIMAT0025388 | ssc-miR-2366 | 3 | __...... | 8 | 75 |
| MIMAT0025300 | mja-miR-6492 | 8 | _......_ | 3 | 75 |
| MIMAT0025028 | sma-miR-190-3p | 8 | __...... | 3 | 75 |
| MIMAT0023835 | cgr-miR-1973 | 6 | _......_ | 1 | 75 |
| MIMAT0022375 | mmu-miR-3073b-5p | 3 | __...... | 8 | 75 |
| MIMAT0022289 | hsa-miR-5587-5p | 3 | __...... | 8 | 75 |
| MIMAT0022109 | pti-miR5476 | 6 | _......_ | 1 | 75 |
| MIMAT0021913 | aca-miR-29a-2-5p | 6 | _......_ | 1 | 75 |
| MIMAT0020725 | bdi-miR5178-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019661 | pma-miR-4627 | 8 | __...... | 3 | 75 |
| MIMAT0019658 | pma-miR-4624 | 3 | ......__ | 8 | 75 |
| MIMAT0019586 | pma-miR-4554 | 3 | __...... | 8 | 75 |
| MIMAT0019270 | oar-miR-1193-3p | 3 | __...... | 8 | 75 |
| MIMAT0019243 | oar-miR-370-5p | 3 | __...... | 8 | 75 |
| MIMAT0018641 | tca-miR-3809-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018631 | tca-miR-2765-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016740 | cin-miR-4141-5p | 2 | __...... | 7 | 75 |
| MIMAT0016610 | cin-miR-4061-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016565 | cin-miR-4038-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017859 | rno-miR-1193-3p | 3 | __...... | 8 | 75 |
| MIMAT0016266 | sja-miR-190-3p | 8 | __...... | 3 | 75 |
| MIMAT0031063 | tgu-miR-29a-2-5p | 6 | _......_ | 1 | 75 |
| MIMAT0013124 | eca-miR-1193 | 3 | __...... | 8 | 75 |
| MIMAT0013459 | mtr-miR2658 | 8 | __...... | 3 | 75 |
| MIMAT0013257 | mtr-miR2587f | 7 | _......_ | 2 | 75 |
| MIMAT0013256 | mtr-miR2587e | 7 | _......_ | 2 | 75 |
| MIMAT0013255 | mtr-miR2587d | 7 | _......_ | 2 | 75 |
| MIMAT0013254 | mtr-miR2587c | 7 | _......_ | 2 | 75 |
| MIMAT0013253 | mtr-miR2587b | 7 | _......_ | 2 | 75 |
| MIMAT0013252 | mtr-miR2587a | 7 | _......_ | 2 | 75 |
| MIMAT0011904 | bta-miR-2366 | 3 | __...... | 8 | 75 |
| MIMAT0011490 | cbr-miR-64b | 8 | ......__ | 3 | 75 |
| MIMAT0011263 | sme-miR-2166 | 3 | __...... | 8 | 75 |
| MIMAT0009965 | bta-miR-1193 | 3 | __...... | 8 | 75 |
| MIMAT0009740 | spu-miR-2001 | 8 | __...... | 3 | 75 |
| MIMAT0009735 | sko-miR-2001 | 8 | __...... | 3 | 75 |
| MIMAT0009731 | lgi-miR-2001 | 8 | __...... | 3 | 75 |
| MIMAT0009721 | isc-miR-2001 | 8 | __...... | 3 | 75 |
| MIMAT0009705 | cte-miR-2001 | 8 | __...... | 3 | 75 |
| MIMAT0026919 | bta-miR-29d-5p | 6 | _......_ | 1 | 75 |
| MIMAT0026857 | mml-miR-370-5p | 3 | __...... | 8 | 75 |
| MIMAT0007309 | oan-miR-1421ak-5p | 3 | __...... | 8 | 75 |
| MIMAT0007242 | oan-miR-1421x-5p | 3 | __...... | 8 | 75 |
| MIMAT0007076 | oan-miR-1421o-5p | 2 | __...... | 7 | 75 |
| MIMAT0006977 | oan-miR-1421h-5p | 2 | __...... | 7 | 75 |
| MIMAT0009167 | oan-miR-29a-2-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005851 | mmu-miR-1193-3p | 3 | __...... | 8 | 75 |
| MIMAT0005551 | mcmv-miR-m88-1-5p | 7 | _......_ | 2 | 75 |
| MIMAT0003676 | xtr-miR-29c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017202 | rno-miR-370-5p | 3 | __...... | 8 | 75 |
| MIMAT0002194 | kshv-miR-K12-3-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015213 | kshv-miR-K12-11-5p | 1 | __...... | 6 | 75 |
| MIMAT0001582 | hcmv-miR-US25-2-5p | 2 | ......__ | 7 | 75 |
| MIMAT0026431 | sbi-miR169d-3p | 3 | ......__ | 8 | 75 |
| MIMAT0001303 | cbr-miR-360 | 6 | _......_ | 1 | 75 |
| MIMAT0017174 | mmu-miR-370-5p | 3 | __...... | 8 | 75 |
| MIMAT0003154 | rno-miR-29c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0026483 | hsa-miR-370-5p | 3 | __...... | 8 | 75 |
| MIMAT0000702 | cel-miR-360-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015121 | cel-miR-360-5p | 8 | __...... | 3 | 75 |
| MIMAT0004673 | hsa-miR-29c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0004632 | mmu-miR-29c-5p | 6 | _......_ | 1 | 75 |
