Result for your query miRNA sequence
>rrv-miR-rr1-9-3p
gcggucau

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1gcggtcat8
MIMAT0037137ata-miR169c-3p2......._887
MIMAT0005560mcmv-miR-m108-2-5p.11......._787
MIMAT0005551mcmv-miR-m88-1-5p7_.......187
MIMAT0030312bdi-miR7779-5p1.a......887
MIMAT0037233ata-miR167d-3p2__......775
MIMAT0037175ata-miR167b-3p2__......775
MIMAT0037109ata-miR167e-3p1__......675
MIMAT0036881oha-miR-29a-2-5p6_......_175
MIMAT0036831oha-miR-215-5p6__......175
MIMAT0036116chi-miR-29c-5p6_......_175
MIMAT0036060chi-miR-215-5p6__......175
MIMAT0035656bra-miR9552b-3p6_......_175
MIMAT0035458sly-miR167b-3p2__......775
MIMAT0034925efu-miR-2157__......275
MIMAT0034288cfa-miR-87982......__775
MIMAT0033542sma-miR-8419-5p8_......_375
MIMAT0032960ppc-miR-8248-5p2......__775
MIMAT0032440ssa-miR-192a-5p6__......175
MIMAT0031304stu-miR167c-3p1__......675
MIMAT0030263bdi-miR7758-3p3......__875
MIMAT0030092bdi-miR167e-3p2__......775
MIMAT0029964mtr-miR2587g7_......_275
MIMAT0029567ipu-miR-75687_......_275
MIMAT0029446ipu-miR-1926__......175
MIMAT0029158ghr-miR7510a3__......875
MIMAT0029143ghr-miR7496b6__......175
MIMAT0029142ghr-miR7496a6__......175
MIMAT0029052gga-miR-7449-5p2__......775
MIMAT0028889mdo-miR-7395-3p6__......175
MIMAT0028843mdo-miR-7386c-3p7__......275
MIMAT0028191dev-miR-D17-3p6......__175
MIMAT0026250ccr-miR-1926__......175
MIMAT0027813mmu-miR-6956-3p6_......_175
MIMAT0025300mja-miR-64928_......_375
MIMAT0024509mse-miR-61017__......275
MIMAT0023853cgr-miR-215-5p6__......175
MIMAT0023835cgr-miR-19736_......_175
MIMAT0022109pti-miR54766_......_175
MIMAT0022090aca-miR-5435b-3p7__......275
MIMAT0021913aca-miR-29a-2-5p6_......_175
MIMAT0021873aca-miR-215-5p6__......175
MIMAT0021175mtr-miR52172__......775
MIMAT0020725bdi-miR5178-3p8_......_375
MIMAT0021115osa-miR51628__......375
MIMAT0019658pma-miR-46243......__875
MIMAT0019581pma-miR-45498......__375
MIMAT0018641tca-miR-3809-3p3_......_875
MIMAT0018631tca-miR-2765-3p3......__875
MIMAT0016610cin-miR-4061-5p3......__875
MIMAT0016565cin-miR-4038-5p1_......_675
MIMAT0017685aly-miR3433-5p1__......675
MIMAT0017480aly-miR167d-3p2__......775
MIMAT0017478aly-miR167c-3p2__......775
MIMAT0017476aly-miR167b-3p1__......675
MIMAT0014577tgu-miR-215-5p6__......175
MIMAT0031063tgu-miR-29a-2-5p6_......_175
MIMAT0013190eca-miR-2156__......175
MIMAT0012751mdo-miR-2156__......175
MIMAT0013257mtr-miR2587f7_......_275
MIMAT0013256mtr-miR2587e7_......_275
MIMAT0013255mtr-miR2587d7_......_275
MIMAT0013254mtr-miR2587c7_......_275
MIMAT0013253mtr-miR2587b7_......_275
MIMAT0013252mtr-miR2587a7_......_275
MIMAT0012001bta-miR-2431-5p3__......875
MIMAT0011997bta-miR-24272__......775
MIMAT0011490cbr-miR-64b8......__375
MIMAT0010192ssc-miR-2156__......175
MIMAT0009848cfa-miR-2156__......175
MIMAT0026919bta-miR-29d-5p6_......_175
MIMAT0007000oan-miR-215-5p6__......175
MIMAT0009167oan-miR-29a-2-5p6_......_175
MIMAT0005555mcmv-miR-m107-1-5p1_......_675
MIMAT0003797bta-miR-2156__......175
MIMAT0003676xtr-miR-29c-5p6_......_175
MIMAT0003628xtr-miR-2156__......175
MIMAT0003615xtr-miR-1926__......175
MIMAT0003118rno-miR-2156__......175
MIMAT0002942tni-miR-1926__......175
MIMAT0002941fru-miR-1926__......175
MIMAT0002736mne-miR-2156__......175
MIMAT0002734ggo-miR-2156__......175
MIMAT0002732ppy-miR-2156__......175
MIMAT0002730ptr-miR-2156__......175
MIMAT0002728mml-miR-215-5p6__......175
MIMAT0002194kshv-miR-K12-3-3p3......__875
MIMAT0015188zma-miR167g-3p1__......675
MIMAT0001582hcmv-miR-US25-2-5p2......__775
MIMAT0026431sbi-miR169d-3p3......__875
MIMAT0015144zma-miR167d-3p1__......675
MIMAT0001303cbr-miR-3606_......_175
MIMAT0001275dre-miR-1926__......175
MIMAT0001134gga-miR-215-5p6__......175
MIMAT0022874osa-miR167h-3p2__......775
MIMAT0031917ath-miR167c-3p3__......875
MIMAT0000904mmu-miR-215-5p6__......175
MIMAT0003154rno-miR-29c-5p6_......_175
MIMAT0000702cel-miR-360-3p6_......_175
MIMAT0004673hsa-miR-29c-5p6_......_175
MIMAT0022860osa-miR167c-3p1__......675
MIMAT0004632mmu-miR-29c-5p6_......_175
MIMAT0000272hsa-miR-215-5p6__......175