| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcgtgta | 7 | ||
| MIMAT0037033 | ssc-miR-9815-3p | 1 | _...... | 6 | 85 |
| MIMAT0036082 | chi-miR-2318 | 1 | _...... | 6 | 85 |
| MIMAT0030881 | stu-miR7995 | 7 | _...... | 2 | 85 |
| MIMAT0030664 | prd-miR-7915-5p | 7 | _...... | 2 | 85 |
| MIMAT0032253 | rgl-miR7803b-3p | 6 | _...... | 1 | 85 |
| MIMAT0029765 | cbn-miR-248 | 7 | _...... | 2 | 85 |
| MIMAT0029625 | crm-miR-7607 | 6 | _...... | 1 | 85 |
| MIMAT0021893 | aca-miR-223-5p | 1 | _...... | 6 | 85 |
| MIMAT0015612 | bmo-miR-3406-3p | 3 | ......_ | 8 | 85 |
| MIMAT0013395 | mtr-miR2631 | 8 | ......_ | 3 | 85 |
| MIMAT0012493 | dsi-miR-137-5p | 2 | _...... | 7 | 85 |
| MIMAT0012237 | dps-miR-137-5p | 2 | _...... | 7 | 85 |
| MIMAT0012206 | dme-miR-2496-5p | 3 | ......_ | 8 | 85 |
| MIMAT0011544 | crm-miR-248 | 7 | _...... | 2 | 85 |
| MIMAT0009692 | aqu-miR-2017-5p | 8 | _...... | 3 | 85 |
| MIMAT0019117 | tca-miR-137-5p | 2 | _...... | 7 | 85 |
| MIMAT0007019 | oan-miR-223-5p | 1 | _...... | 6 | 85 |
| MIMAT0005510 | dme-miR-992-3p | 8 | _...... | 3 | 85 |
| MIMAT0020888 | dme-miR-137-5p | 2 | _...... | 7 | 85 |
| MIMAT0003483 | mmu-miR-696 | 1 | ......_ | 6 | 85 |
| MIMAT0017222 | rno-miR-485-3p | 8 | _...... | 3 | 85 |
| MIMAT0017165 | rno-miR-223-5p | 1 | _...... | 6 | 85 |
| MIMAT0017056 | mmu-miR-223-5p | 1 | _...... | 6 | 85 |
| MIMAT0000504 | cbr-miR-248 | 6 | _...... | 1 | 85 |
| MIMAT0000304 | cel-miR-248 | 7 | _...... | 2 | 85 |
| MIMAT0004570 | hsa-miR-223-5p | 1 | _...... | 6 | 85 |
