| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gctacacc | 8 | ||
| MIMAT0016784 | cin-miR-4175-3p | 8 | ........ | 1 | 100 |
| MIMAT0019191 | rlcv-miR-rL1-26-5p | 1 | ........ | 8 | 100 |
| MIMAT0033488 | str-miR-8397-5p | 8 | _....... | 2 | 87 |
| MIMAT0028034 | mmu-miR-7065-5p | 8 | ......._ | 2 | 87 |
| MIMAT0027330 | ppe-miR6294 | 8 | _....... | 2 | 87 |
| MIMAT0024874 | osa-miR6251 | 8 | ......._ | 2 | 87 |
| MIMAT0021815 | aca-miR-187-5p | 1 | ......a. | 8 | 87 |
| MIMAT0027004 | tgu-miR-187-5p | 1 | ......a. | 8 | 87 |
| MIMAT0007266 | oan-miR-187-5p | 1 | ......a. | 8 | 87 |
| MIMAT0037049 | ssc-miR-9831-3p | 8 | _......_ | 3 | 75 |
| MIMAT0036851 | oha-miR-222b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036849 | oha-miR-222a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036847 | oha-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036600 | tch-miR-222-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036523 | tch-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036070 | chi-miR-222-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036069 | chi-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035345 | gsa-miR-9399-3p | 7 | __...... | 2 | 75 |
| MIMAT0034499 | eca-miR-8964 | 7 | _......_ | 2 | 75 |
| MIMAT0034109 | gra-miR8720 | 8 | _......_ | 3 | 75 |
| MIMAT0033812 | pxy-miR-8544-3p | 8 | ......__ | 3 | 75 |
| MIMAT0033749 | pxy-miR-2756 | 6 | ......__ | 1 | 75 |
| MIMAT0033326 | str-miR-252a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032543 | ssa-miR-222b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032541 | ssa-miR-222a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032539 | ssa-miR-221-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031260 | stu-miR399i-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030731 | prd-miR-7936-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030664 | prd-miR-7915-5p | 1 | _......_ | 6 | 75 |
| MIMAT0030047 | oar-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0029765 | cbn-miR-248 | 1 | _......_ | 6 | 75 |
| MIMAT0029476 | ipu-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0028936 | mdo-miR-7398i-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028934 | mdo-miR-7398t-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028930 | mdo-miR-7398g-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028928 | mdo-miR-7398j-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028922 | mdo-miR-7398d-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028920 | mdo-miR-7398q-5p | 7 | _......_ | 2 | 75 |
| MIMAT0031054 | mdo-miR-7398a-5-5p | 7 | _......_ | 2 | 75 |
| MIMAT0031053 | mdo-miR-7398a-4-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028900 | mdo-miR-7398a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028916 | mdo-miR-7398b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028914 | mdo-miR-7398c-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028912 | mdo-miR-7398m-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028910 | mdo-miR-7398l-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028902 | mdo-miR-7398r-5p | 8 | _......_ | 3 | 75 |
| MIMAT0031051 | mdo-miR-7398a-1-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028898 | mdo-miR-7398f-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028896 | mdo-miR-7398e-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028888 | mdo-miR-7395-5p | 1 | __...... | 6 | 75 |
| MIMAT0026274 | ccr-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0026273 | ccr-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0027444 | hsa-miR-6772-5p | 8 | __...... | 3 | 75 |
| MIMAT0025752 | gga-miR-6652-5p | 8 | __...... | 3 | 75 |
| MIMAT0025618 | gga-miR-222b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025449 | pol-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025408 | tgu-miR-1789 | 8 | __...... | 3 | 75 |
| MIMAT0024285 | ggo-miR-508 | 8 | ......__ | 3 | 75 |
| MIMAT0024092 | ggo-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0024026 | ptr-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0023861 | cgr-miR-222-3p | 2 | ......__ | 7 | 75 |
| MIMAT0023859 | cgr-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0022797 | sha-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0022796 | sha-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0022531 | ola-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0022530 | ola-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0022083 | aca-miR-5456 | 8 | ......__ | 3 | 75 |
| MIMAT0021892 | aca-miR-222a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021890 | aca-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021384 | isc-miR-5313 | 7 | ......__ | 2 | 75 |
| MIMAT0019534 | pma-miR-222-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019532 | pma-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0018827 | tca-miR-3867-3p | 1 | __...... | 6 | 75 |
| MIMAT0018175 | mghv-miR-M1-14-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016911 | hsa-miR-4280 | 8 | _......_ | 3 | 75 |
| MIMAT0016649 | cin-miR-4080-5p | 2 | ......__ | 7 | 75 |
| MIMAT0015808 | ppy-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0015020 | hsa-miR-548v | 2 | ......__ | 7 | 75 |
| MIMAT0015005 | hsa-miR-3137 | 8 | ......__ | 3 | 75 |
| MIMAT0014514 | tgu-miR-222-3p | 2 | ......__ | 7 | 75 |
| MIMAT0014512 | tgu-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0013942 | ssc-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0013204 | eca-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0013203 | eca-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0012867 | hvt-miR-H14-3p | 2 | ......__ | 7 | 75 |
| MIMAT0013580 | cte-miR-2711 | 8 | __...... | 3 | 75 |
| MIMAT0012514 | dsi-miR-982b | 3 | _......_ | 8 | 75 |
| MIMAT0011303 | dre-miR-222b | 2 | ......__ | 7 | 75 |
| MIMAT0009851 | cfa-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0009710 | cte-miR-1999 | 8 | ......__ | 3 | 75 |
| MIMAT0009391 | mmu-miR-1928 | 2 | ......__ | 7 | 75 |
| MIMAT0008076 | ptr-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0007893 | mdv1-miR-M31 | 2 | ......__ | 7 | 75 |
| MIMAT0007762 | ssc-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0006757 | cfa-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0006250 | mml-miR-222-3p | 2 | ......__ | 7 | 75 |
| MIMAT0026833 | mml-miR-187-5p | 2 | ......__ | 7 | 75 |
| MIMAT0007702 | gga-miR-1789 | 8 | __...... | 3 | 75 |
| MIMAT0007584 | gga-miR-1692 | 6 | ......__ | 1 | 75 |
| MIMAT0015248 | cin-let-7a-2-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007135 | oan-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007133 | oan-miR-222a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007057 | oan-miR-222b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004160 | mdo-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004159 | mdo-miR-222a | 2 | ......__ | 7 | 75 |
| MIMAT0026674 | mdo-miR-187-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003700 | xtr-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0003633 | xtr-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0003530 | bta-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0003529 | bta-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0015220 | hsv1-miR-H1-3p | 1 | __...... | 6 | 75 |
| MIMAT0002907 | tni-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0002906 | fru-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0002905 | tni-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0002904 | fru-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0002587 | age-miR-222 | 2 | ......__ | 7 | 75 |
| MIMAT0002586 | ppa-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0002585 | ppy-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0002584 | ggo-miR-221 | 2 | ......__ | 7 | 75 |
| MIMAT0002583 | mml-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0001289 | dre-miR-222a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0001288 | dre-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0026507 | gga-miR-187-5p | 2 | ......__ | 7 | 75 |
| MIMAT0001108 | gga-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0001107 | gga-miR-222a | 2 | ......__ | 7 | 75 |
| MIMAT0000891 | rno-miR-222-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000890 | rno-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017144 | rno-miR-187-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000670 | mmu-miR-222-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000669 | mmu-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000279 | hsa-miR-222-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000278 | hsa-miR-221-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004561 | hsa-miR-187-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016997 | mmu-miR-187-5p | 3 | ......__ | 8 | 75 |
