| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gctacag | 7 | ||
| MIMAT0024285 | ggo-miR-508 | 8 | ....... | 2 | 100 |
| MIMAT0022083 | aca-miR-5456 | 8 | ....... | 2 | 100 |
| MIMAT0018175 | mghv-miR-M1-14-3p | 2 | ....... | 8 | 100 |
| MIMAT0015020 | hsa-miR-548v | 2 | ....... | 8 | 100 |
| MIMAT0015005 | hsa-miR-3137 | 8 | ....... | 2 | 100 |
| MIMAT0007893 | mdv1-miR-M31 | 2 | ....... | 8 | 100 |
| MIMAT0036715 | oha-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0036540 | tch-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0034638 | eca-miR-9093 | 6 | _...... | 1 | 85 |
| MIMAT0034375 | cfa-miR-8875 | 8 | _...... | 3 | 85 |
| MIMAT0033812 | pxy-miR-8544-3p | 8 | ......_ | 3 | 85 |
| MIMAT0033749 | pxy-miR-2756 | 6 | ......_ | 1 | 85 |
| MIMAT0032368 | ssa-miR-144-3p | 1 | _...... | 6 | 85 |
| MIMAT0032356 | ssa-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0031260 | stu-miR399i-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030616 | prd-miR-993-5p | 8 | _...... | 3 | 85 |
| MIMAT0030601 | prd-miR-7901-3p | 8 | _...... | 3 | 85 |
| MIMAT0030137 | bdi-miR7710-5p | 3 | _...... | 8 | 85 |
| MIMAT0029421 | ipu-miR-144 | 1 | _...... | 6 | 85 |
| MIMAT0029416 | ipu-miR-139 | 2 | _...... | 7 | 85 |
| MIMAT0028213 | hsa-miR-7151-3p | 1 | _...... | 6 | 85 |
| MIMAT0026225 | ccr-miR-144 | 1 | _...... | 6 | 85 |
| MIMAT0026219 | ccr-miR-139 | 2 | _...... | 7 | 85 |
| MIMAT0028034 | mmu-miR-7065-5p | 8 | ......_ | 3 | 85 |
| MIMAT0024874 | osa-miR6251 | 8 | ......_ | 3 | 85 |
| MIMAT0024106 | ggo-miR-139 | 2 | _...... | 7 | 85 |
| MIMAT0023765 | cgr-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0022803 | sha-miR-139 | 2 | _...... | 7 | 85 |
| MIMAT0022616 | ola-miR-139 | 2 | _...... | 7 | 85 |
| MIMAT0022013 | aca-miR-5402-3p | 8 | _...... | 3 | 85 |
| MIMAT0021815 | aca-miR-187-5p | 1 | ......_ | 6 | 85 |
| MIMAT0021762 | aca-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0021395 | rmi-miR-5322 | 8 | _...... | 3 | 85 |
| MIMAT0016784 | cin-miR-4175-3p | 8 | ......_ | 3 | 85 |
| MIMAT0016147 | ppy-miR-1183 | 8 | _...... | 3 | 85 |
| MIMAT0015761 | ppy-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0027004 | tgu-miR-187-5p | 1 | ......_ | 6 | 85 |
| MIMAT0014500 | tgu-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0019191 | rlcv-miR-rL1-26-5p | 1 | ......_ | 6 | 85 |
| MIMAT0012983 | eca-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0012744 | mdo-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0009837 | cfa-miR-10b | 8 | _...... | 3 | 85 |
| MIMAT0009710 | cte-miR-1999 | 8 | ......_ | 3 | 85 |
| MIMAT0007951 | ptr-miR-1183 | 8 | _...... | 3 | 85 |
| MIMAT0006195 | mml-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0026799 | mml-miR-20b-3p | 8 | _...... | 3 | 85 |
| MIMAT0007686 | gga-miR-1775-3p | 8 | _...... | 3 | 85 |
| MIMAT0007584 | gga-miR-1692 | 6 | ......_ | 1 | 85 |
| MIMAT0007335 | gga-miR-1457 | 3 | _...... | 8 | 85 |
| MIMAT0007266 | oan-miR-187-5p | 1 | ......_ | 6 | 85 |
| MIMAT0006904 | oan-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0005828 | hsa-miR-1183 | 8 | _...... | 3 | 85 |
| MIMAT0026674 | mdo-miR-187-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003788 | bta-miR-139 | 2 | _...... | 7 | 85 |
| MIMAT0003776 | gga-miR-144-3p | 1 | _...... | 6 | 85 |
| MIMAT0003600 | xtr-miR-139 | 2 | _...... | 7 | 85 |
| MIMAT0003446 | rlcv-miR-rL1-15-3p | 8 | _...... | 3 | 85 |
| MIMAT0003349 | dre-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0002473 | ppa-miR-139 | 2 | _...... | 7 | 85 |
| MIMAT0002472 | lla-miR-139 | 2 | _...... | 7 | 85 |
| MIMAT0002183 | kshv-miR-K12-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0002159 | ssc-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0004752 | hsa-miR-20b-3p | 7 | _...... | 2 | 85 |
| MIMAT0026504 | gga-miR-196-2-3p | 1 | _...... | 6 | 85 |
| MIMAT0017144 | rno-miR-187-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000845 | rno-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0000783 | rno-miR-10b-5p | 8 | _...... | 3 | 85 |
| MIMAT0000656 | mmu-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0000250 | hsa-miR-139-5p | 2 | _...... | 7 | 85 |
| MIMAT0016997 | mmu-miR-187-5p | 3 | ......_ | 8 | 85 |
