| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gctcgcg | 7 | ||
| MIMAT0035419 | nve-miR-9458 | 8 | ....... | 2 | 100 |
| MIMAT0026391 | sbi-miR5564c-3p | 8 | ....... | 2 | 100 |
| MIMAT0019606 | pma-miR-4573 | 1 | ....... | 7 | 100 |
| MIMAT0005556 | mcmv-miR-m107-1-3p | 2 | ....... | 8 | 100 |
| MIMAT0035768 | tae-miR9660-5p | 8 | ......_ | 3 | 85 |
| MIMAT0035645 | dvi-miR-974-2-5p | 8 | ......_ | 3 | 85 |
| MIMAT0035644 | dvi-miR-974-1-5p | 8 | ......_ | 3 | 85 |
| MIMAT0035349 | gsa-miR-9394b-3p | 7 | _...... | 2 | 85 |
| MIMAT0033554 | sma-miR-8425-5p | 8 | _...... | 3 | 85 |
| MIMAT0028809 | mdo-miR-7376-3p | 3 | ......_ | 8 | 85 |
| MIMAT0022435 | ath-miR5642b | 2 | _...... | 7 | 85 |
| MIMAT0022403 | ath-miR5642a | 2 | _...... | 7 | 85 |
| MIMAT0019597 | pma-miR-4565 | 8 | ......_ | 3 | 85 |
| MIMAT0018260 | gma-miR4364a | 6 | _...... | 1 | 85 |
| MIMAT0016529 | cin-miR-4018a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0005364 | tae-miR1129 | 8 | ......_ | 3 | 85 |
| MIMAT0005490 | dme-miR-974-5p | 8 | ......_ | 3 | 85 |
| MIMAT0026579 | mml-miR-99a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015208 | zma-miR156k-3p | 1 | ......_ | 6 | 85 |
| MIMAT0022850 | osa-miR156j-3p | 1 | ......_ | 6 | 85 |
