| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcttcgc | 7 | ||
| MIMAT0014064 | rlcv-miR-rL1-17-3p | 2 | ....... | 8 | 100 |
| MIMAT0020318 | cel-miR-72-3p | 2 | ....... | 8 | 100 |
| MIMAT0035194 | efu-miR-9367 | 3 | ......_ | 8 | 85 |
| MIMAT0034402 | cfa-miR-8894 | 8 | ......_ | 3 | 85 |
| MIMAT0033956 | esi-miR8621 | 2 | _...... | 7 | 85 |
| MIMAT0033759 | pxy-miR-8520-3p | 1 | _...... | 6 | 85 |
| MIMAT0031846 | cpa-miR8149 | 7 | _...... | 2 | 85 |
| MIMAT0031541 | ppe-miR477-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030584 | prd-miR-7880b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029793 | mmu-miR-6546-3p | 8 | _...... | 3 | 85 |
| MIMAT0023479 | hco-miR-5972 | 1 | ......_ | 6 | 85 |
| MIMAT0023275 | osa-miR5804 | 7 | _...... | 2 | 85 |
| MIMAT0011990 | bta-miR-1843 | 3 | ......_ | 8 | 85 |
| MIMAT0009410 | mmu-miR-1945 | 2 | _...... | 7 | 85 |
| MIMAT0005677 | vvi-miR169y | 8 | _...... | 3 | 85 |
| MIMAT0005249 | smo-miR1094c | 3 | _...... | 8 | 85 |
