| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcttgcag | 8 | ||
| MIMAT0037026 | ssc-miR-9808-3p | 2 | _....... | 8 | 87 |
| MIMAT0035670 | bra-miR9558-3p | 8 | ......._ | 2 | 87 |
| MIMAT0035574 | dvi-miR-932-3p | 7 | ......._ | 1 | 87 |
| MIMAT0034783 | efu-miR-9198e | 2 | ......._ | 8 | 87 |
| MIMAT0016889 | hsa-miR-4327 | 2 | ......._ | 8 | 87 |
| MIMAT0014415 | cqu-miR-932-3p | 7 | ......._ | 1 | 87 |
| MIMAT0014270 | aae-miR-932-3p | 7 | ......._ | 1 | 87 |
| MIMAT0013571 | cte-miR-2705 | 8 | _....... | 2 | 87 |
| MIMAT0012478 | dsi-miR-932-3p | 7 | ......._ | 1 | 87 |
| MIMAT0012260 | dps-miR-932-3p | 7 | ......._ | 1 | 87 |
| MIMAT0011775 | hsa-miR-2276-3p | 8 | _....... | 2 | 87 |
| MIMAT0019132 | tca-miR-932-3p | 7 | ......._ | 1 | 87 |
| MIMAT0020860 | dme-miR-932-3p | 7 | ......._ | 1 | 87 |
| MIMAT0029571 | ipu-miR-7572 | 1 | .a...... | 8 | 87 |
| MIMAT0028483 | mdo-miR-7258-3p | 8 | .a...... | 1 | 87 |
| MIMAT0036598 | tch-miR-1301 | 1 | __...... | 6 | 75 |
| MIMAT0036458 | ptr-miR-1283b | 6 | __...... | 1 | 75 |
| MIMAT0036454 | ptr-miR-518g-5p | 6 | __...... | 1 | 75 |
| MIMAT0036431 | ggo-miR-1283 | 6 | __...... | 1 | 75 |
| MIMAT0035907 | chi-miR-106a-3p | 8 | __...... | 3 | 75 |
| MIMAT0035803 | tae-miR5048-5p | 2 | __...... | 7 | 75 |
| MIMAT0035775 | tae-miR9664-3p | 1 | __...... | 6 | 75 |
| MIMAT0035476 | sly-miR169e-3p | 8 | ......__ | 3 | 75 |
| MIMAT0035235 | hbr-miR9386 | 2 | __...... | 7 | 75 |
| MIMAT0034962 | efu-miR-9186n | 2 | __...... | 7 | 75 |
| MIMAT0034862 | efu-miR-9246b | 6 | _......_ | 1 | 75 |
| MIMAT0034782 | efu-miR-9198d | 2 | _......_ | 7 | 75 |
| MIMAT0034775 | efu-miR-9195 | 7 | ......__ | 2 | 75 |
| MIMAT0034730 | eca-miR-9154 | 2 | __...... | 7 | 75 |
| MIMAT0034624 | eca-miR-9079 | 3 | __...... | 8 | 75 |
| MIMAT0034593 | eca-miR-9049 | 7 | _......_ | 2 | 75 |
| MIMAT0034393 | cfa-miR-6516 | 2 | __...... | 7 | 75 |
| MIMAT0034339 | cfa-miR-8845 | 6 | _......_ | 1 | 75 |
| MIMAT0034337 | cfa-miR-1301 | 1 | __...... | 6 | 75 |
| MIMAT0032715 | ssa-miR-93a-2-3p | 7 | __...... | 2 | 75 |
| MIMAT0032714 | ssa-miR-93a-3p | 7 | __...... | 2 | 75 |
| MIMAT0032668 | ssa-miR-722-3p | 2 | __...... | 7 | 75 |
| MIMAT0032503 | ssa-miR-20a-1-3p | 7 | __...... | 2 | 75 |
| MIMAT0031370 | stu-miR169f-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030443 | bta-miR-6516 | 2 | __...... | 7 | 75 |
| MIMAT0030417 | hsa-miR-6516-5p | 2 | __...... | 7 | 75 |
| MIMAT0032237 | lva-miR-4854-3p | 3 | __...... | 8 | 75 |
| MIMAT0029593 | cbr-miR-7583c-5p | 8 | __...... | 3 | 75 |
| MIMAT0029553 | ipu-miR-7557 | 2 | ......__ | 7 | 75 |
| MIMAT0029369 | lja-miR7542 | 2 | ......__ | 7 | 75 |
| MIMAT0028881 | mdo-miR-7391-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028450 | mmu-miR-7241-5p | 2 | _......_ | 7 | 75 |
| MIMAT0026374 | bma-miR-5875 | 8 | _......_ | 3 | 75 |
| MIMAT0027585 | hsa-miR-6841-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025771 | gga-miR-6669-3p | 1 | __...... | 6 | 75 |
| MIMAT0027343 | mmu-miR-6516-5p | 2 | __...... | 7 | 75 |
| MIMAT0025335 | pde-miR482c | 2 | ......__ | 7 | 75 |
| MIMAT0025174 | mmu-miR-6418-3p | 7 | __...... | 2 | 75 |
| MIMAT0024539 | cca-miR6106-5p | 7 | _......_ | 2 | 75 |
| MIMAT0024158 | ggo-miR-1301 | 1 | __...... | 6 | 75 |
| MIMAT0023962 | cgr-miR-450b-5p | 3 | __...... | 8 | 75 |
| MIMAT0023889 | cgr-miR-300 | 8 | _......_ | 3 | 75 |
| MIMAT0023395 | hco-miR-5921-5p | 6 | __...... | 1 | 75 |
| MIMAT0023365 | hco-miR-5909 | 7 | __...... | 2 | 75 |
| MIMAT0023258 | osa-miR5791 | 1 | __...... | 6 | 75 |
| MIMAT0022596 | ola-miR-187 | 8 | __...... | 3 | 75 |
| MIMAT0022009 | aca-miR-5399-3p | 7 | _......_ | 2 | 75 |
| MIMAT0021242 | mtr-miR5246 | 1 | __...... | 6 | 75 |
| MIMAT0020541 | hsa-miR-5047 | 1 | __...... | 6 | 75 |
| MIMAT0020209 | dme-miR-4977-3p | 2 | _......_ | 7 | 75 |
| MIMAT0020077 | spu-miR-4854 | 3 | __...... | 8 | 75 |
| MIMAT0019927 | hsa-miR-4772-3p | 7 | __...... | 2 | 75 |
| MIMAT0019790 | hsa-miR-4696 | 6 | _......_ | 1 | 75 |
| MIMAT0019605 | pma-miR-4572 | 1 | ......__ | 6 | 75 |
| MIMAT0018895 | tca-miR-3896-3p | 8 | __...... | 3 | 75 |
| MIMAT0018770 | tca-miR-3856-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018150 | pab-miR482d | 2 | ......__ | 7 | 75 |
| MIMAT0018130 | pab-miR3698 | 1 | _......_ | 6 | 75 |
| MIMAT0018027 | vvi-miR3630-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016782 | cin-miR-4173-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027030 | gga-miR-3531-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016221 | ppy-miR-1301 | 1 | __...... | 6 | 75 |
| MIMAT0016205 | ppy-miR-1283b | 7 | __...... | 2 | 75 |
| MIMAT0015986 | ppy-miR-527 | 6 | __...... | 1 | 75 |
| MIMAT0015951 | ppy-miR-518a-5p | 6 | __...... | 1 | 75 |
| MIMAT0017621 | aly-miR838-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017619 | aly-miR835-5p | 3 | _......_ | 8 | 75 |
| MIMAT0015531 | bmo-miR-3344 | 7 | _......_ | 2 | 75 |
| MIMAT0015475 | bmo-miR-3288 | 3 | ......__ | 8 | 75 |
| MIMAT0013070 | eca-miR-1301 | 1 | __...... | 6 | 75 |
| MIMAT0012367 | dps-miR-2553-3p | 3 | __...... | 8 | 75 |
| MIMAT0010068 | osa-miR2102-5p | 8 | ......__ | 3 | 75 |
| MIMAT0010022 | ppt-miR2083-5p | 3 | _......_ | 8 | 75 |
| MIMAT0009958 | bta-miR-1301 | 1 | __...... | 6 | 75 |
| MIMAT0009394 | mmu-miR-1931 | 7 | _......_ | 2 | 75 |
| MIMAT0008212 | ptr-miR-527 | 6 | __...... | 1 | 75 |
| MIMAT0007729 | gga-miR-1811 | 3 | __...... | 8 | 75 |
| MIMAT0006850 | oan-miR-106-3p | 7 | __...... | 2 | 75 |
| MIMAT0004255 | ath-miR835-5p | 3 | _......_ | 8 | 75 |
| MIMAT0026696 | mdo-miR-191-3p | 7 | __...... | 2 | 75 |
| MIMAT0003511 | mmu-miR-450b-5p | 3 | __...... | 8 | 75 |
| MIMAT0005797 | hsa-miR-1301-3p | 1 | __...... | 6 | 75 |
| MIMAT0002862 | hsa-miR-527 | 6 | __...... | 1 | 75 |
| MIMAT0005457 | hsa-miR-518a-5p | 6 | __...... | 1 | 75 |
| MIMAT0026604 | mml-miR-106a-3p | 7 | __...... | 2 | 75 |
| MIMAT0022899 | ptc-miR169n-3p | 6 | ......__ | 1 | 75 |
| MIMAT0031983 | dre-miR-196a-3p | 6 | __...... | 1 | 75 |
| MIMAT0031939 | dre-miR-20b-3p | 7 | __...... | 2 | 75 |
| MIMAT0000902 | rno-miR-300-3p | 8 | _......_ | 3 | 75 |
| MIMAT0000378 | mmu-miR-300-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004517 | hsa-miR-106a-3p | 6 | __...... | 1 | 75 |
