| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggaaccaa | 8 | ||
| MIMAT0033963 | esi-miR8622c | 8 | ........ | 1 | 100 |
| MIMAT0033959 | esi-miR8622b | 8 | _....... | 2 | 87 |
| MIMAT0033957 | esi-miR8622a | 8 | _....... | 2 | 87 |
| MIMAT0032834 | cel-miR-8208-3p | 7 | _....... | 1 | 87 |
| MIMAT0021318 | mtr-miR5279 | 2 | ......._ | 8 | 87 |
| MIMAT0031080 | mml-miR-218-1-3p | 8 | ......._ | 2 | 87 |
| MIMAT0004320 | ath-miR869.1 | 8 | _....... | 2 | 87 |
| MIMAT0003337 | hsa-miR-659-3p | 8 | _....... | 2 | 87 |
| MIMAT0004565 | hsa-miR-218-1-3p | 8 | ......._ | 2 | 87 |
| MIMAT0036856 | oha-miR-23b-5p | 8 | ......c. | 1 | 87 |
| MIMAT0036088 | chi-miR-23b-5p | 8 | ......c. | 1 | 87 |
| MIMAT0032663 | ssa-miR-551-5p | 1 | .a...... | 8 | 87 |
| MIMAT0014838 | mmu-miR-3066-5p | 8 | .c...... | 1 | 87 |
| MIMAT0014644 | tgu-miR-23-5p | 8 | ......c. | 1 | 87 |
| MIMAT0006958 | oan-miR-23b-5p | 8 | ......c. | 1 | 87 |
| MIMAT0005251 | smo-miR1095b | 8 | ......t. | 1 | 87 |
| MIMAT0005250 | smo-miR1095a | 8 | ......t. | 1 | 87 |
| MIMAT0003933 | ath-miR774a | 8 | .t...... | 1 | 87 |
| MIMAT0004587 | hsa-miR-23b-5p | 8 | ......c. | 1 | 87 |
| MIMAT0037227 | ata-miR2275c-3p | 7 | __...... | 2 | 75 |
| MIMAT0036854 | oha-miR-23a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0036838 | oha-miR-218-2-3p | 7 | _......_ | 2 | 75 |
| MIMAT0036810 | oha-miR-203-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036765 | oha-miR-182-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035808 | tae-miR9679-5p | 3 | _......_ | 8 | 75 |
| MIMAT0035777 | tae-miR2275-3p | 7 | __...... | 2 | 75 |
| MIMAT0035535 | bdi-miR2275c | 7 | __...... | 2 | 75 |
| MIMAT0035533 | bdi-miR2275a | 7 | __...... | 2 | 75 |
| MIMAT0035510 | bdi-miR159c | 7 | __...... | 2 | 75 |
| MIMAT0035092 | efu-miR-9337 | 8 | __...... | 3 | 75 |
| MIMAT0034821 | efu-miR-9223g | 6 | _......_ | 1 | 75 |
| MIMAT0034478 | eca-miR-8949 | 1 | _......_ | 6 | 75 |
| MIMAT0034248 | gra-miR8717 | 7 | __...... | 2 | 75 |
| MIMAT0033962 | esi-miR8625 | 1 | __...... | 6 | 75 |
| MIMAT0033667 | sma-miR-8473-5p | 1 | __...... | 6 | 75 |
| MIMAT0033622 | sma-miR-8455-5p | 8 | __...... | 3 | 75 |
| MIMAT0032552 | ssa-miR-23b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032550 | ssa-miR-23a-4-5p | 8 | ......__ | 3 | 75 |
| MIMAT0032486 | ssa-miR-203b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032485 | ssa-miR-203a-2-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032483 | ssa-miR-203a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032459 | ssa-miR-196b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032428 | ssa-miR-182-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032400 | ssa-miR-15c-2-3p | 2 | _......_ | 7 | 75 |
| MIMAT0031664 | bbe-miR-29b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0031566 | ppe-miR6288c-3p | 1 | __...... | 6 | 75 |
| MIMAT0031556 | ppe-miR8130-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030673 | prd-miR-7907b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0030377 | ptc-miR7817a | 7 | __...... | 2 | 75 |
| MIMAT0030306 | bdi-miR7777-5p.1 | 8 | __...... | 3 | 75 |
| MIMAT0029949 | bta-miR-133c | 8 | __...... | 3 | 75 |
| MIMAT0029539 | ipu-miR-199b | 2 | __...... | 7 | 75 |
| MIMAT0029458 | ipu-miR-203b | 8 | _......_ | 3 | 75 |
| MIMAT0029457 | ipu-miR-203a | 8 | _......_ | 3 | 75 |
| MIMAT0029308 | mes-miR2275 | 7 | __...... | 2 | 75 |
| MIMAT0031111 | mdo-miR-218-2-3p | 7 | _......_ | 2 | 75 |
| MIMAT0026261 | ccr-miR-203b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0026242 | ccr-miR-182-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028035 | mmu-miR-7065-3p | 6 | __...... | 1 | 75 |
| MIMAT0027997 | mmu-miR-7046-3p | 2 | _......_ | 7 | 75 |
| MIMAT0027987 | mmu-miR-7041-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025644 | gga-miR-6568-3p | 3 | __...... | 8 | 75 |
| MIMAT0025442 | pol-miR-203-5p | 8 | _......_ | 3 | 75 |
| MIMAT0025439 | pol-miR-182-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025325 | pde-miR159 | 7 | __...... | 2 | 75 |
| MIMAT0025124 | mmu-miR-6378 | 6 | _......_ | 1 | 75 |
| MIMAT0024958 | hme-miR-2768 | 7 | __...... | 2 | 75 |
| MIMAT0024460 | mse-miR-2768 | 7 | __...... | 2 | 75 |
| MIMAT0023864 | cgr-miR-23b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0023862 | cgr-miR-23a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0023695 | hsa-miR-6070 | 8 | ......__ | 3 | 75 |
| MIMAT0023653 | bna-miR6033 | 2 | _......_ | 7 | 75 |
| MIMAT0023516 | spu-miR-5994 | 2 | ......__ | 7 | 75 |
| MIMAT0023453 | hco-miR-5951 | 6 | ......__ | 1 | 75 |
| MIMAT0023392 | hco-miR-5919 | 8 | __...... | 3 | 75 |
| MIMAT0023282 | osa-miR5810 | 3 | ......__ | 8 | 75 |
| MIMAT0023080 | tur-miR-133-5p | 8 | __...... | 3 | 75 |
| MIMAT0022355 | mmu-miR-5615-5p | 7 | __...... | 2 | 75 |
| MIMAT0021897 | aca-miR-23b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0021895 | aca-miR-23a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0021851 | aca-miR-203-5p | 8 | _......_ | 3 | 75 |
| MIMAT0021812 | aca-miR-182-3p | 6 | _......_ | 1 | 75 |
| MIMAT0021472 | asu-miR-79-5p | 7 | __...... | 2 | 75 |
| MIMAT0021407 | rmi-miR-5334 | 8 | __...... | 3 | 75 |
| MIMAT0027079 | bdi-miR166g-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019513 | pma-miR-203b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019511 | pma-miR-203a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0022736 | hsa-miR-642b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018188 | hsa-miR-3914 | 3 | ......__ | 8 | 75 |
| MIMAT0018893 | tca-miR-3895-3p | 2 | ......__ | 7 | 75 |
| MIMAT0018847 | tca-miR-3877-3p | 1 | __...... | 6 | 75 |
| MIMAT0018689 | tca-miR-3829-3p | 7 | __...... | 2 | 75 |
| MIMAT0018143 | pab-miR3710 | 3 | ......__ | 8 | 75 |
| MIMAT0016939 | bta-miR-3604 | 2 | __...... | 7 | 75 |
| MIMAT0017969 | ssc-miR-218-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017724 | aly-miR3445-5p.1 | 2 | _......_ | 7 | 75 |
| MIMAT0015521 | bmo-miR-3334 | 2 | _......_ | 7 | 75 |
| MIMAT0014773 | api-miR-3036 | 7 | __...... | 2 | 75 |
| MIMAT0014702 | hsv2-miR-H20 | 7 | __...... | 2 | 75 |
| MIMAT0027022 | tgu-miR-203-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014100 | bma-miR-9-5p | 8 | __...... | 3 | 75 |
| MIMAT0013974 | zma-miR159e-3p | 7 | __...... | 2 | 75 |
| MIMAT0013815 | osa-miR2868 | 6 | __...... | 1 | 75 |
| MIMAT0013647 | bmo-miR-2768-3p | 7 | __...... | 2 | 75 |
| MIMAT0013402 | mtr-miR2636 | 7 | __...... | 2 | 75 |
| MIMAT0011759 | osa-miR2275b | 7 | __...... | 2 | 75 |
| MIMAT0011758 | osa-miR2275a | 7 | __...... | 2 | 75 |
| MIMAT0019140 | bfl-miR-29b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032062 | dvi-miR-133-5p | 8 | __...... | 3 | 75 |
| MIMAT0032052 | dvi-miR-263b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0015282 | dsi-miR-312-5p | 6 | _......_ | 1 | 75 |
| MIMAT0026800 | mml-miR-23b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0007450 | gga-miR-1588 | 3 | ......__ | 8 | 75 |
| MIMAT0015262 | cin-miR-183-3p | 7 | _......_ | 2 | 75 |
| MIMAT0007060 | oan-miR-23a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0006819 | oan-miR-1332-3p | 8 | __...... | 3 | 75 |
| MIMAT0005379 | cre-miR1144a.2 | 2 | ......__ | 7 | 75 |
| MIMAT0005360 | tae-miR1125 | 1 | __...... | 6 | 75 |
| MIMAT0004412 | rrv-miR-rR1-5 | 3 | ......__ | 8 | 75 |
| MIMAT0026713 | mdo-miR-23b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0026710 | mdo-miR-23a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0026680 | mdo-miR-218-1-3p | 7 | _......_ | 2 | 75 |
| MIMAT0026672 | mdo-miR-182-3p | 7 | _......_ | 2 | 75 |
| MIMAT0012128 | sme-miR-277d-5p | 7 | __...... | 2 | 75 |
| MIMAT0003925 | mdv1-miR-M4-3p | 8 | _......_ | 3 | 75 |
| MIMAT0012538 | bta-miR-23b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0003611 | xtr-miR-182-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026619 | hsa-miR-597-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003094 | tni-miR-182 | 6 | _......_ | 1 | 75 |
| MIMAT0003093 | fru-miR-182 | 6 | _......_ | 1 | 75 |
| MIMAT0026599 | mml-miR-23a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0026589 | mml-miR-218-2-3p | 7 | _......_ | 2 | 75 |
| MIMAT0002256 | mne-miR-140 | 8 | _......_ | 3 | 75 |
| MIMAT0003407 | dre-miR-203b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0015159 | osa-miR396e-3p | 7 | _......_ | 2 | 75 |
| MIMAT0031923 | dre-miR-203a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0001272 | dre-miR-182-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026546 | gga-miR-23b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0026518 | gga-miR-218-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004740 | rno-miR-218a-2-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017153 | rno-miR-203a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0017099 | rno-miR-23b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004712 | rno-miR-23a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0005444 | mmu-miR-218-2-3p | 8 | _......_ | 3 | 75 |
| MIMAT0000639 | osa-miR166e-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017019 | mmu-miR-23a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0020838 | dme-miR-312-5p | 6 | _......_ | 1 | 75 |
| MIMAT0020822 | dme-miR-263b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0004566 | hsa-miR-218-2-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031890 | hsa-miR-203a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000260 | hsa-miR-182-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004547 | mmu-miR-203-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016995 | mmu-miR-182-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016980 | mmu-miR-23b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004496 | hsa-miR-23a-5p | 8 | ......__ | 3 | 75 |
