| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggagagc | 7 | ||
| MIMAT0031660 | bbe-miR-281-5p | 2 | ....... | 8 | 100 |
| MIMAT0028400 | mmu-miR-7216-5p | 2 | ....... | 8 | 100 |
| MIMAT0019400 | pma-miR-22b-5p | 8 | ....... | 2 | 100 |
| MIMAT0004415 | rrv-miR-rR1-7-5p | 2 | ....... | 8 | 100 |
| MIMAT0002063 | ptc-miR473b | 7 | ....... | 1 | 100 |
| MIMAT0034599 | eca-miR-9055 | 2 | _...... | 7 | 85 |
| MIMAT0034479 | eca-miR-8950 | 2 | _...... | 7 | 85 |
| MIMAT0033592 | sma-miR-281-5p | 3 | _...... | 8 | 85 |
| MIMAT0033512 | sma-miR-8405-5p | 1 | _...... | 6 | 85 |
| MIMAT0033404 | str-miR-47-5p | 3 | ......_ | 8 | 85 |
| MIMAT0033271 | ppc-miR-8364s-3p | 2 | _...... | 7 | 85 |
| MIMAT0033265 | ppc-miR-8364l-3p | 2 | _...... | 7 | 85 |
| MIMAT0033263 | ppc-miR-8364r-3p | 1 | _...... | 6 | 85 |
| MIMAT0033107 | ppc-miR-8364v-5p | 6 | ......_ | 1 | 85 |
| MIMAT0033022 | ppc-miR-8268-5p | 7 | _...... | 2 | 85 |
| MIMAT0031425 | mmu-miR-8119 | 3 | ......_ | 8 | 85 |
| MIMAT0031419 | mmu-miR-8113 | 3 | ......_ | 8 | 85 |
| MIMAT0031300 | stu-miR156d-3p | 6 | _...... | 1 | 85 |
| MIMAT0031012 | hsa-miR-8085 | 3 | ......_ | 8 | 85 |
| MIMAT0030508 | prd-miR-46-5p | 3 | _...... | 8 | 85 |
| MIMAT0029294 | mes-miR477e | 6 | ......_ | 1 | 85 |
| MIMAT0029293 | mes-miR477d | 6 | ......_ | 1 | 85 |
| MIMAT0029292 | mes-miR477c | 6 | ......_ | 1 | 85 |
| MIMAT0029291 | mes-miR477b | 6 | ......_ | 1 | 85 |
| MIMAT0029290 | mes-miR477a | 6 | ......_ | 1 | 85 |
| MIMAT0031028 | oan-miR-30c-1-3p | 3 | ......_ | 8 | 85 |
| MIMAT0031090 | mdo-miR-30c-2-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028448 | mmu-miR-7240-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028357 | mml-miR-7197-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028341 | mml-miR-7191-3p | 6 | _...... | 1 | 85 |
| MIMAT0026102 | cme-miR477b | 6 | ......_ | 1 | 85 |
| MIMAT0028031 | mmu-miR-7063-3p | 7 | _...... | 2 | 85 |
| MIMAT0028018 | mmu-miR-7057-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027928 | mmu-miR-7012-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027909 | mmu-miR-6973b-3p | 7 | _...... | 2 | 85 |
| MIMAT0027788 | mmu-miR-6944-5p | 3 | _...... | 8 | 85 |
| MIMAT0027635 | hsa-miR-6867-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027363 | hsa-miR-6731-5p | 3 | ......_ | 8 | 85 |
| MIMAT0024818 | hvu-miR6192 | 3 | ......_ | 8 | 85 |
| MIMAT0023691 | ame-miR-6066 | 3 | ......_ | 8 | 85 |
| MIMAT0023116 | hsa-miR-5739 | 3 | ......_ | 8 | 85 |
| MIMAT0023046 | tur-miR-281-5p | 3 | _...... | 8 | 85 |
| MIMAT0021550 | asu-miR-5349-5p | 8 | _...... | 3 | 85 |
| MIMAT0021457 | asu-miR-46-5p | 3 | _...... | 8 | 85 |
| MIMAT0021248 | mtr-miR5252 | 2 | _...... | 7 | 85 |
| MIMAT0018476 | csi-miR477b | 6 | ......_ | 1 | 85 |
| MIMAT0016909 | hsa-miR-4279 | 6 | ......_ | 1 | 85 |
| MIMAT0016319 | ahy-miR156b-3p | 6 | _...... | 1 | 85 |
| MIMAT0016194 | ppy-miR-1270 | 3 | ......_ | 8 | 85 |
| MIMAT0017764 | esi-miR3469-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017420 | aly-miR157d-3p | 6 | _...... | 1 | 85 |
| MIMAT0017418 | aly-miR157c-3p | 6 | _...... | 1 | 85 |
| MIMAT0017416 | aly-miR157b-3p | 6 | _...... | 1 | 85 |
| MIMAT0017414 | aly-miR157a-3p | 6 | _...... | 1 | 85 |
| MIMAT0017412 | aly-miR156h-3p | 6 | _...... | 1 | 85 |
| MIMAT0014678 | hma-miR-3010 | 2 | _...... | 7 | 85 |
| MIMAT0014358 | cqu-miR-281-5p | 3 | _...... | 8 | 85 |
| MIMAT0014231 | aae-miR-281-5p | 3 | _...... | 8 | 85 |
| MIMAT0014230 | aae-miR-306-3p | 1 | _...... | 6 | 85 |
| MIMAT0017362 | rno-miR-802-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012587 | aqc-miR477c | 6 | ......_ | 1 | 85 |
| MIMAT0012586 | aqc-miR477b | 6 | ......_ | 1 | 85 |
| MIMAT0012585 | aqc-miR477a | 6 | ......_ | 1 | 85 |
| MIMAT0012584 | aqc-miR477e | 6 | ......_ | 1 | 85 |
| MIMAT0012583 | aqc-miR477f | 6 | ......_ | 1 | 85 |
| MIMAT0012582 | aqc-miR477g | 6 | ......_ | 1 | 85 |
| MIMAT0011970 | bta-miR-1584-3p | 8 | ......_ | 3 | 85 |
| MIMAT0011778 | hsa-miR-2278 | 1 | _...... | 6 | 85 |
| MIMAT0011597 | crm-miR-46-5p | 3 | _...... | 8 | 85 |
| MIMAT0010140 | lmi-miR-281-5p | 3 | _...... | 8 | 85 |
| MIMAT0009689 | aqu-miR-2015-3p | 8 | ......_ | 3 | 85 |
| MIMAT0009060 | dya-miR-281-1-5p | 3 | _...... | 8 | 85 |
| MIMAT0009190 | dya-miR-281-2-5p | 3 | _...... | 8 | 85 |
| MIMAT0008994 | dwi-miR-281-1-5p | 3 | _...... | 8 | 85 |
| MIMAT0009189 | dwi-miR-281-2-5p | 3 | _...... | 8 | 85 |
| MIMAT0008926 | dvi-miR-281-1-5p | 3 | _...... | 8 | 85 |
| MIMAT0009188 | dvi-miR-281-2-5p | 3 | _...... | 8 | 85 |
| MIMAT0008905 | dsi-miR-281-5p | 3 | _...... | 8 | 85 |
| MIMAT0008782 | dse-miR-281-1-5p | 3 | _...... | 8 | 85 |
| MIMAT0009187 | dse-miR-281-2-5p | 3 | _...... | 8 | 85 |
| MIMAT0009186 | dpe-miR-281-2-5p | 3 | _...... | 8 | 85 |
| MIMAT0008727 | dpe-miR-281-1-5p | 3 | _...... | 8 | 85 |
| MIMAT0009185 | dmo-miR-281-2-5p | 3 | _...... | 8 | 85 |
| MIMAT0008641 | dmo-miR-281-1-5p | 3 | _...... | 8 | 85 |
| MIMAT0009184 | dgr-miR-281-2-5p | 3 | _...... | 8 | 85 |
| MIMAT0008587 | dgr-miR-281-1-5p | 3 | _...... | 8 | 85 |
| MIMAT0008501 | der-miR-281-1-5p | 3 | _...... | 8 | 85 |
| MIMAT0009183 | der-miR-281-2-5p | 3 | _...... | 8 | 85 |
| MIMAT0008428 | dan-miR-281-1-5p | 3 | _...... | 8 | 85 |
| MIMAT0009182 | dan-miR-281-2-5p | 3 | _...... | 8 | 85 |
| MIMAT0008384 | tca-miR-281-5p | 3 | _...... | 8 | 85 |
| MIMAT0007904 | bmo-miR-281-5p | 3 | _...... | 8 | 85 |
| MIMAT0007877 | mmu-miR-1894-5p | 6 | ......_ | 1 | 85 |
| MIMAT0026805 | mml-miR-30c-1-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007684 | gga-miR-1773-3p | 1 | ......_ | 6 | 85 |
| MIMAT0005375 | ppt-miR477b | 6 | ......_ | 1 | 85 |
| MIMAT0005052 | ppt-miR477e | 6 | ......_ | 1 | 85 |
| MIMAT0005051 | ppt-miR477d | 6 | ......_ | 1 | 85 |
| MIMAT0004360 | ppt-miR477a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004359 | ppt-miR477c | 6 | ......_ | 1 | 85 |
| MIMAT0026728 | mtr-miR156g-3p | 6 | _...... | 1 | 85 |
| MIMAT0017277 | mmu-miR-504-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004310 | ath-miR863-3p | 3 | _...... | 8 | 85 |
| MIMAT0003766 | dre-miR-735-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017240 | mmu-miR-802-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015181 | zma-miR319c-5p | 8 | _...... | 3 | 85 |
| MIMAT0015180 | zma-miR319a-5p | 8 | _...... | 3 | 85 |
| MIMAT0015175 | zma-miR156j-3p | 7 | _...... | 2 | 85 |
| MIMAT0031105 | gga-miR-30c-1-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000349 | dme-miR-281-2-5p | 3 | _...... | 8 | 85 |
| MIMAT0031872 | ath-miR157c-3p | 6 | _...... | 1 | 85 |
| MIMAT0031871 | ath-miR157b-3p | 6 | _...... | 1 | 85 |
| MIMAT0031870 | ath-miR157a-3p | 6 | _...... | 1 | 85 |
| MIMAT0015097 | cel-miR-47-5p | 3 | _...... | 8 | 85 |
| MIMAT0015096 | cel-miR-46-5p | 3 | _...... | 8 | 85 |
