| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggagatg | 7 | ||
| MIMAT0030257 | bdi-miR7756-3p | 2 | ....... | 8 | 100 |
| MIMAT0021372 | mtr-miR5298d | 2 | ....... | 8 | 100 |
| MIMAT0020601 | hsa-miR-1273f | 1 | ....... | 7 | 100 |
| MIMAT0022982 | gma-miR2118b-5p | 1 | ....... | 7 | 100 |
| MIMAT0022981 | gma-miR2118a-5p | 1 | ....... | 7 | 100 |
| MIMAT0014626 | tgu-miR-139-3p | 2 | ....... | 8 | 100 |
| MIMAT0037154 | ata-miR9772b-5p | 2 | _...... | 7 | 85 |
| MIMAT0037106 | ata-miR9772a-5p | 2 | _...... | 7 | 85 |
| MIMAT0036982 | tae-miR9772 | 2 | _...... | 7 | 85 |
| MIMAT0036724 | oha-miR-143-3p | 2 | _...... | 7 | 85 |
| MIMAT0036476 | tch-miR-143-3p | 2 | _...... | 7 | 85 |
| MIMAT0035964 | chi-miR-143-3p | 2 | _...... | 7 | 85 |
| MIMAT0035669 | bra-miR9558-5p | 2 | _...... | 7 | 85 |
| MIMAT0034686 | eca-miR-9135 | 6 | ......_ | 1 | 85 |
| MIMAT0034615 | eca-miR-9070 | 2 | _...... | 7 | 85 |
| MIMAT0033656 | sma-miR-8468-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033207 | ppc-miR-8331-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033105 | ppc-miR-8296-5p | 3 | _...... | 8 | 85 |
| MIMAT0032995 | ppc-miR-8261-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032994 | ppc-miR-8250d-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032988 | ppc-miR-8250a-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032965 | ppc-miR-8250a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032939 | ppc-miR-8241-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032848 | ppc-miR-2251b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032366 | ssa-miR-143-3p | 2 | _...... | 7 | 85 |
| MIMAT0031840 | cpa-miR8143 | 3 | _...... | 8 | 85 |
| MIMAT0031685 | bbe-miR-4864-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031549 | ppe-miR5225-3p | 7 | _...... | 2 | 85 |
| MIMAT0030930 | stu-miR7980b-3p | 1 | _...... | 6 | 85 |
| MIMAT0030925 | stu-miR1886i-5p | 3 | _...... | 8 | 85 |
| MIMAT0030900 | stu-miR1886g-5p | 1 | _...... | 6 | 85 |
| MIMAT0030847 | stu-miR7980a | 3 | _...... | 8 | 85 |
| MIMAT0030308 | bdi-miR7777-3p.2 | 2 | _...... | 7 | 85 |
| MIMAT0030295 | bdi-miR7772-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030032 | oar-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0029420 | ipu-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0031147 | aja-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0029296 | mes-miR477g | 6 | ......_ | 1 | 85 |
| MIMAT0029295 | mes-miR477f | 6 | ......_ | 1 | 85 |
| MIMAT0026224 | ccr-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0027855 | mmu-miR-6976-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027676 | hsa-miR-6888-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025728 | gga-miR-6632-5p | 2 | _...... | 7 | 85 |
| MIMAT0025716 | gga-miR-6620-5p | 2 | _...... | 7 | 85 |
| MIMAT0025689 | gga-miR-6595-5p | 2 | _...... | 7 | 85 |
| MIMAT0025275 | ptc-miR477d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031174 | ppe-miR482d-5p | 1 | _...... | 6 | 85 |
| MIMAT0023772 | cgr-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0023713 | hsa-miR-6088 | 2 | _...... | 7 | 85 |
| MIMAT0022668 | ola-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0022024 | aca-miR-5408a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0021770 | aca-miR-143-3p | 2 | _...... | 7 | 85 |
| MIMAT0020627 | mmu-miR-5119 | 6 | _...... | 1 | 85 |
| MIMAT0020188 | dme-miR-4965-5p | 1 | _...... | 6 | 85 |
| MIMAT0020097 | bfl-miR-4864-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019924 | hsa-miR-4770 | 2 | _...... | 7 | 85 |
| MIMAT0019809 | hsa-miR-4708-5p | 2 | _...... | 7 | 85 |
| MIMAT0019580 | pma-miR-4548 | 8 | _...... | 3 | 85 |
| MIMAT0019473 | pma-miR-143-3p | 2 | _...... | 7 | 85 |
| MIMAT0018099 | hsa-miR-3675-3p | 6 | _...... | 1 | 85 |
| MIMAT0018014 | vvi-miR3625-3p | 3 | ......_ | 8 | 85 |
| MIMAT0016665 | cin-miR-4088-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017739 | ath-miR774b-5p | 2 | _...... | 7 | 85 |
| MIMAT0017699 | aly-miR774b-5p | 2 | _...... | 7 | 85 |
| MIMAT0017663 | aly-miR319d-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017433 | aly-miR319c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015361 | zma-miR482-5p | 3 | ......_ | 8 | 85 |
| MIMAT0013879 | ssc-miR-143-3p | 2 | _...... | 7 | 85 |
| MIMAT0013063 | eca-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0012617 | bmo-miR-2739 | 1 | _...... | 6 | 85 |
| MIMAT0013585 | cte-miR-2716 | 3 | _...... | 8 | 85 |
| MIMAT0011454 | cel-miR-2209b-3p | 2 | _...... | 7 | 85 |
| MIMAT0010058 | osa-miR2097-5p | 2 | _...... | 7 | 85 |
| MIMAT0009405 | mmu-miR-1941-5p | 3 | ......_ | 8 | 85 |
| MIMAT0009233 | bta-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0012129 | ath-miR1886.2 | 2 | _...... | 7 | 85 |
| MIMAT0006682 | cfa-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0006575 | vvi-miR477a | 6 | ......_ | 1 | 85 |
| MIMAT0006201 | mml-miR-143-3p | 2 | _...... | 7 | 85 |
| MIMAT0007619 | gga-miR-1721 | 2 | _...... | 7 | 85 |
| MIMAT0007418 | gga-miR-1560-3p | 7 | _...... | 2 | 85 |
| MIMAT0007144 | oan-miR-143-3p | 2 | _...... | 7 | 85 |
| MIMAT0005924 | hsa-miR-1270 | 3 | ......_ | 8 | 85 |
| MIMAT0004113 | mdo-miR-143-3p | 2 | _...... | 7 | 85 |
| MIMAT0003686 | xtr-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0003289 | hsa-miR-620 | 3 | ......_ | 8 | 85 |
| MIMAT0002261 | ppa-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0002260 | lla-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0002259 | ppy-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0002258 | ggo-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0002257 | ptr-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0002075 | ptc-miR477b | 6 | ......_ | 1 | 85 |
| MIMAT0002074 | ptc-miR477a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0001840 | dre-miR-143 | 2 | _...... | 7 | 85 |
| MIMAT0000849 | rno-miR-143-3p | 2 | _...... | 7 | 85 |
| MIMAT0000435 | hsa-miR-143-3p | 2 | _...... | 7 | 85 |
| MIMAT0000247 | mmu-miR-143-3p | 2 | _...... | 7 | 85 |
