| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggagttct | 8 | ||
| MIMAT0014241 | aae-miR-11-5p | 8 | ........ | 1 | 100 |
| MIMAT0036979 | bta-miR-4680 | 7 | _....... | 1 | 87 |
| MIMAT0035695 | bra-miR9563b-5p | 8 | _....... | 2 | 87 |
| MIMAT0034837 | efu-miR-9230c | 8 | ......._ | 2 | 87 |
| MIMAT0034054 | gra-miR8683 | 7 | _....... | 1 | 87 |
| MIMAT0033001 | ppc-miR-2253c-5p | 2 | ......._ | 8 | 87 |
| MIMAT0029980 | mtr-miR319c-5p | 1 | ......._ | 7 | 87 |
| MIMAT0025596 | gga-miR-6546-3p | 1 | ......._ | 7 | 87 |
| MIMAT0024773 | nta-miR6161d | 8 | ......._ | 2 | 87 |
| MIMAT0022082 | aca-miR-5455-3p | 1 | _....... | 7 | 87 |
| MIMAT0022072 | aca-miR-5450 | 2 | _....... | 8 | 87 |
| MIMAT0019764 | hsa-miR-4680-5p | 7 | _....... | 1 | 87 |
| MIMAT0015043 | hsa-miR-3168 | 1 | _....... | 7 | 87 |
| MIMAT0035978 | chi-miR-148b-5p | 1 | .a...... | 8 | 87 |
| MIMAT0032532 | ssa-miR-219c-2-3p | 1 | ......g. | 8 | 87 |
| MIMAT0029475 | ipu-miR-219b | 1 | ......g. | 8 | 87 |
| MIMAT0025447 | pol-miR-219-3p | 1 | ......g. | 8 | 87 |
| MIMAT0023778 | cgr-miR-148b-5p | 1 | .a...... | 8 | 87 |
| MIMAT0022073 | aca-miR-5408b | 8 | ......g. | 1 | 87 |
| MIMAT0021782 | aca-miR-148b-5p | 1 | .a...... | 8 | 87 |
| MIMAT0016908 | hsa-miR-4277 | 1 | .c...... | 8 | 87 |
| MIMAT0022955 | ssc-miR-148b-5p | 1 | .a...... | 8 | 87 |
| MIMAT0012971 | eca-miR-148b-5p | 1 | .a...... | 8 | 87 |
| MIMAT0026826 | mml-miR-148b-5p | 1 | .a...... | 8 | 87 |
| MIMAT0031989 | dre-miR-219-3p | 1 | ......g. | 8 | 87 |
| MIMAT0017036 | mmu-miR-148b-5p | 1 | .a...... | 8 | 87 |
| MIMAT0004645 | rno-miR-148b-5p | 1 | .a...... | 8 | 87 |
| MIMAT0036844 | oha-miR-22b | 3 | __...... | 8 | 75 |
| MIMAT0036733 | oha-miR-148a-5p | 3 | __...... | 8 | 75 |
| MIMAT0036729 | oha-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0036567 | tch-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0036387 | gma-miR9756 | 8 | __...... | 3 | 75 |
| MIMAT0036075 | chi-miR-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0035976 | chi-miR-148a-5p | 3 | __...... | 8 | 75 |
| MIMAT0035972 | chi-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0035971 | chi-miR-146a | 8 | __...... | 3 | 75 |
| MIMAT0035724 | rno-miR-148a-5p | 3 | __...... | 8 | 75 |
| MIMAT0035484 | sly-miR477-3p | 1 | __...... | 6 | 75 |
| MIMAT0034868 | efu-miR-9251 | 8 | __...... | 3 | 75 |
| MIMAT0034071 | gra-miR7584e | 2 | ......__ | 7 | 75 |
| MIMAT0033539 | sma-miR-8417-3p | 6 | __...... | 1 | 75 |
| MIMAT0033490 | str-miR-8398-5p | 1 | __...... | 6 | 75 |
| MIMAT0033003 | ppc-miR-2253d-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032544 | ssa-miR-22a-5p | 1 | __...... | 6 | 75 |
| MIMAT0032531 | ssa-miR-219c-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032385 | ssa-miR-152-5p | 3 | __...... | 8 | 75 |
| MIMAT0032379 | ssa-miR-148a-5p | 2 | __...... | 7 | 75 |
| MIMAT0032376 | ssa-miR-146d-5p | 8 | __...... | 3 | 75 |
| MIMAT0032374 | ssa-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0032371 | ssa-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0031771 | hbv-miR-B26-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031710 | bbe-miR-4899-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031651 | bbe-miR-219-3p | 7 | __...... | 2 | 75 |
| MIMAT0030770 | prd-miR-7950a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0030712 | prd-miR-7950c-5p | 1 | _......_ | 6 | 75 |
| MIMAT0029992 | mtr-miR7696d-5p | 2 | __...... | 7 | 75 |
| MIMAT0029990 | mtr-miR7696c-5p | 2 | __...... | 7 | 75 |
| MIMAT0029424 | ipu-miR-146b | 8 | __...... | 3 | 75 |
| MIMAT0029423 | ipu-miR-146a | 8 | __...... | 3 | 75 |
| MIMAT0028659 | mdo-miR-7328-3p | 8 | __...... | 3 | 75 |
| MIMAT0028634 | mdo-miR-7317-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028475 | mdo-miR-7254-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028216 | hsa-miR-7153-5p | 8 | __...... | 3 | 75 |
| MIMAT0026355 | bma-miR-5856b | 6 | ......__ | 1 | 75 |
| MIMAT0026226 | ccr-miR-146a | 8 | __...... | 3 | 75 |
| MIMAT0027649 | hsa-miR-6874-3p | 2 | __...... | 7 | 75 |
| MIMAT0027401 | hsa-miR-6750-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025426 | pol-miR-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0025116 | mmu-miR-6372 | 6 | __...... | 1 | 75 |
| MIMAT0025062 | rno-miR-6323 | 8 | _......_ | 3 | 75 |
| MIMAT0024845 | rno-miR-3068-5p | 3 | ......__ | 8 | 75 |
| MIMAT0024763 | nta-miR1446 | 7 | _......_ | 2 | 75 |
| MIMAT0024403 | ppy-miR-3145 | 6 | ......__ | 1 | 75 |
| MIMAT0027120 | mml-miR-3145-5p | 6 | ......__ | 1 | 75 |
| MIMAT0024135 | ggo-miR-146a | 8 | __...... | 3 | 75 |
| MIMAT0024096 | ggo-miR-146b | 8 | __...... | 3 | 75 |
| MIMAT0023856 | cgr-miR-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0023775 | cgr-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0023774 | cgr-miR-146a | 8 | __...... | 3 | 75 |
| MIMAT0023564 | tca-miR-6011-3p | 7 | __...... | 2 | 75 |
| MIMAT0023122 | mtr-miR5743b | 8 | __...... | 3 | 75 |
| MIMAT0023121 | mtr-miR5743a | 8 | __...... | 3 | 75 |
| MIMAT0022635 | ola-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0022284 | hsa-miR-5584-3p | 2 | __...... | 7 | 75 |
| MIMAT0022098 | aca-miR-5465 | 8 | __...... | 3 | 75 |
| MIMAT0022077 | aca-miR-5408c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021887 | aca-miR-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0021780 | aca-miR-148a-5p | 3 | __...... | 8 | 75 |
| MIMAT0021777 | aca-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0021775 | aca-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0021642 | gma-miR159f-5p | 1 | _......_ | 6 | 75 |
| MIMAT0020491 | bfl-miR-4899 | 6 | ......__ | 1 | 75 |
| MIMAT0019915 | hsa-miR-4764-3p | 8 | ......__ | 3 | 75 |
| MIMAT0019719 | hsa-miR-4653-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019478 | pma-miR-146-5p | 8 | __...... | 3 | 75 |
| MIMAT0019048 | hsa-miR-4511 | 8 | __...... | 3 | 75 |
| MIMAT0018496 | csi-miR3953 | 3 | _......_ | 8 | 75 |
| MIMAT0018284 | gma-miR4378b | 7 | __...... | 2 | 75 |
| MIMAT0018264 | gma-miR4365 | 7 | __...... | 2 | 75 |
| MIMAT0018688 | tca-miR-3829-5p | 3 | _......_ | 8 | 75 |
| MIMAT0018582 | ame-miR-3797 | 7 | __...... | 2 | 75 |
| MIMAT0016932 | bta-miR-3600 | 3 | __...... | 8 | 75 |
| MIMAT0022963 | ssc-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0017909 | aly-miR4221 | 3 | _......_ | 8 | 75 |
| MIMAT0017804 | rno-miR-449c-3p | 7 | __...... | 2 | 75 |
| MIMAT0017798 | rno-miR-3544 | 6 | ......__ | 1 | 75 |
| MIMAT0015768 | ppy-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0015767 | ppy-miR-146a | 8 | __...... | 3 | 75 |
| MIMAT0015709 | ssc-miR-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0017677 | aly-miR163-5p.1 | 2 | _......_ | 7 | 75 |
| MIMAT0017614 | aly-miR831-3p | 8 | ......__ | 3 | 75 |
| MIMAT0019205 | hsa-miR-3145-5p | 6 | ......__ | 1 | 75 |
| MIMAT0014899 | mmu-miR-3089-5p | 2 | _......_ | 7 | 75 |
| MIMAT0014842 | mmu-miR-3068-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014840 | mmu-miR-3067-5p | 1 | __...... | 6 | 75 |
| MIMAT0014609 | tgu-miR-146c | 8 | __...... | 3 | 75 |
| MIMAT0014602 | tgu-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0026973 | tgu-miR-148-5p | 3 | __...... | 8 | 75 |
| MIMAT0014622 | tgu-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0014406 | cqu-miR-11-5p | 8 | __...... | 3 | 75 |
| MIMAT0014052 | osa-miR2921 | 7 | __...... | 2 | 75 |
| MIMAT0013065 | eca-miR-146a | 8 | __...... | 3 | 75 |
| MIMAT0012891 | eca-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0012747 | mdo-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0012746 | mdo-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0026930 | mdo-miR-148-5p | 3 | __...... | 8 | 75 |
| MIMAT0013688 | bmo-miR-2790-3p | 8 | __...... | 3 | 75 |
| MIMAT0012526 | dsi-miR-983a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012479 | dsi-miR-969-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012375 | dps-miR-2556-3p | 1 | __...... | 6 | 75 |
| MIMAT0012275 | dps-miR-969-5p | 1 | _......_ | 6 | 75 |
| MIMAT0010203 | hsv2-miR-H4-5p | 1 | _......_ | 6 | 75 |
| MIMAT0010190 | ssc-miR-146b | 8 | __...... | 3 | 75 |
| MIMAT0010026 | mtr-miR2086-5p | 3 | __...... | 8 | 75 |
| MIMAT0022953 | spu-miR-219-3p | 6 | __...... | 1 | 75 |
| MIMAT0009236 | bta-miR-146a | 8 | __...... | 3 | 75 |
| MIMAT0009235 | bta-miR-146b | 8 | __...... | 3 | 75 |
| MIMAT0032048 | dvi-miR-11-5p | 8 | __...... | 3 | 75 |
| MIMAT0019113 | tca-miR-100-3p | 3 | __...... | 8 | 75 |
| MIMAT0008039 | ptr-miR-146b | 8 | __...... | 3 | 75 |
| MIMAT0008038 | ptr-miR-146a | 8 | __...... | 3 | 75 |
| MIMAT0006684 | cfa-miR-146a | 8 | __...... | 3 | 75 |
| MIMAT0006667 | cfa-miR-146b | 8 | __...... | 3 | 75 |
| MIMAT0026825 | mml-miR-148a-5p | 3 | __...... | 8 | 75 |
| MIMAT0006204 | mml-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0006203 | mml-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0007735 | gga-miR-146c-5p | 8 | __...... | 3 | 75 |
| MIMAT0020934 | gma-miR159b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0006046 | odi-miR-1493 | 6 | __...... | 1 | 75 |
| MIMAT0005980 | mdv1-miR-M9-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007287 | gga-miR-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0007247 | oan-miR-1419c-5p | 1 | __...... | 6 | 75 |
| MIMAT0007230 | oan-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0007137 | oan-miR-148-5p | 3 | __...... | 8 | 75 |
| MIMAT0007007 | oan-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0006961 | oan-miR-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0005595 | rno-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0005856 | mmu-miR-1195 | 2 | _......_ | 7 | 75 |
| MIMAT0005563 | xtr-miR-146b | 8 | __...... | 3 | 75 |
| MIMAT0005485 | dme-miR-969-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026651 | mdo-miR-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0003826 | bta-miR-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0003671 | xtr-miR-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0003604 | xtr-miR-146a | 8 | __...... | 3 | 75 |
| MIMAT0003475 | mmu-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0003351 | gga-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0002809 | hsa-miR-146b-5p | 8 | __...... | 3 | 75 |
| MIMAT0022920 | ssc-miR-148a-5p | 3 | __...... | 8 | 75 |
| MIMAT0001844 | dre-miR-146b | 8 | __...... | 3 | 75 |
| MIMAT0001843 | dre-miR-146a | 8 | __...... | 3 | 75 |
| MIMAT0031942 | dre-miR-22a-5p | 1 | __...... | 6 | 75 |
| MIMAT0001163 | gga-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0026503 | gga-miR-148a-5p | 3 | __...... | 8 | 75 |
| MIMAT0000852 | rno-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0003152 | rno-miR-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0004699 | hsa-miR-148b-5p | 2 | __...... | 7 | 75 |
| MIMAT0004629 | mmu-miR-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0004617 | mmu-miR-148a-5p | 3 | __...... | 8 | 75 |
| MIMAT0000449 | hsa-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0004549 | hsa-miR-148a-5p | 3 | __...... | 8 | 75 |
| MIMAT0000158 | mmu-miR-146a-5p | 8 | __...... | 3 | 75 |
| MIMAT0020793 | dme-miR-11-5p | 8 | __...... | 3 | 75 |
| MIMAT0004495 | hsa-miR-22-5p | 1 | __...... | 6 | 75 |
