| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggatgga | 7 | ||
| MIMAT0032923 | ppc-miR-8234-3p | 8 | ....... | 2 | 100 |
| MIMAT0028352 | mml-miR-7196-5p | 7 | ....... | 1 | 100 |
| MIMAT0026404 | sbi-miR6220-5p | 8 | ....... | 2 | 100 |
| MIMAT0026462 | hhv6b-miR-Ro6-4-5p | 2 | ....... | 8 | 100 |
| MIMAT0019073 | hsa-miR-4534 | 1 | ....... | 7 | 100 |
| MIMAT0037280 | ame-miR-9876 | 3 | ......_ | 8 | 85 |
| MIMAT0036400 | gma-miR9763 | 8 | ......_ | 3 | 85 |
| MIMAT0035424 | nve-miR-9465 | 3 | ......_ | 8 | 85 |
| MIMAT0034458 | eca-miR-8930 | 8 | _...... | 3 | 85 |
| MIMAT0034179 | gra-miR8752 | 2 | _...... | 7 | 85 |
| MIMAT0034120 | gra-miR8726 | 2 | _...... | 7 | 85 |
| MIMAT0033951 | atr-miR2950 | 7 | _...... | 2 | 85 |
| MIMAT0033716 | pxy-miR-8504 | 6 | ......_ | 1 | 85 |
| MIMAT0033368 | str-miR-7880n-5p | 2 | _...... | 7 | 85 |
| MIMAT0032850 | ppc-miR-2235b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031009 | hsa-miR-8082 | 2 | _...... | 7 | 85 |
| MIMAT0030996 | hsa-miR-8069 | 1 | ......_ | 6 | 85 |
| MIMAT0030972 | stu-miR8048-3p | 2 | _...... | 7 | 85 |
| MIMAT0030945 | stu-miR8035 | 6 | _...... | 1 | 85 |
| MIMAT0030930 | stu-miR7980b-3p | 3 | _...... | 8 | 85 |
| MIMAT0030157 | bdi-miR7717a-3p | 1 | _...... | 6 | 85 |
| MIMAT0029663 | cbn-miR-789b | 6 | ......_ | 1 | 85 |
| MIMAT0029594 | cbr-miR-7583c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029586 | cbr-miR-7583b | 6 | ......_ | 1 | 85 |
| MIMAT0029585 | cbr-miR-7583a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029309 | mes-miR2950 | 7 | _...... | 2 | 85 |
| MIMAT0029091 | gga-miR-7468-3p | 2 | _...... | 7 | 85 |
| MIMAT0028963 | oan-miR-7408-3p | 8 | _...... | 3 | 85 |
| MIMAT0028726 | mdo-miR-7357-5p | 1 | _...... | 6 | 85 |
| MIMAT0028616 | mdo-miR-7309-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028212 | hsa-miR-7151-5p | 8 | _...... | 3 | 85 |
| MIMAT0028193 | dev-miR-D18-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028093 | mmu-miR-7093-3p | 8 | _...... | 3 | 85 |
| MIMAT0027944 | mmu-miR-7020-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027712 | mmu-miR-6906-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025681 | gga-miR-6589-5p | 2 | _...... | 7 | 85 |
| MIMAT0025652 | gga-miR-6572-3p | 2 | _...... | 7 | 85 |
| MIMAT0024037 | ptr-miR-2392 | 3 | ......_ | 8 | 85 |
| MIMAT0022338 | cin-miR-5605-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021371 | mtr-miR5298c | 2 | _...... | 7 | 85 |
| MIMAT0021370 | mtr-miR5298b | 2 | _...... | 7 | 85 |
| MIMAT0019580 | pma-miR-4548 | 6 | _...... | 1 | 85 |
| MIMAT0019043 | hsa-miR-2392 | 3 | ......_ | 8 | 85 |
| MIMAT0018595 | ame-miR-3728 | 6 | ......_ | 1 | 85 |
| MIMAT0018009 | vvi-miR2950-5p | 7 | _...... | 2 | 85 |
| MIMAT0017784 | esi-miR3454d-3p | 8 | _...... | 3 | 85 |
| MIMAT0017770 | esi-miR3454e-3p | 8 | _...... | 3 | 85 |
| MIMAT0017752 | esi-miR3454c-3p | 8 | _...... | 3 | 85 |
| MIMAT0017748 | esi-miR3454a-3p | 8 | _...... | 3 | 85 |
| MIMAT0017746 | esi-miR3454g-3p | 8 | _...... | 3 | 85 |
| MIMAT0017652 | aly-miR861-3p | 1 | _...... | 6 | 85 |
| MIMAT0017627 | aly-miR842-5p | 3 | _...... | 8 | 85 |
| MIMAT0015530 | bmo-miR-3343 | 8 | _...... | 3 | 85 |
| MIMAT0015384 | bmo-miR-3206 | 8 | _...... | 3 | 85 |
| MIMAT0015000 | hsa-miR-3134 | 2 | _...... | 7 | 85 |
| MIMAT0019185 | rlcv-miR-rL1-17-5p | 2 | _...... | 7 | 85 |
| MIMAT0012732 | mdv2-miR-M32-5p | 8 | _...... | 3 | 85 |
| MIMAT0012317 | dps-miR-2527 | 2 | _...... | 7 | 85 |
| MIMAT0011981 | bta-miR-2417 | 2 | _...... | 7 | 85 |
| MIMAT0011945 | bta-miR-2392 | 3 | ......_ | 8 | 85 |
| MIMAT0011437 | cel-miR-2211-5p | 8 | _...... | 3 | 85 |
| MIMAT0011271 | sme-miR-2171 | 3 | _...... | 8 | 85 |
| MIMAT0009442 | mmu-miR-1969 | 3 | _...... | 8 | 85 |
| MIMAT0007635 | gga-miR-1733 | 3 | ......_ | 8 | 85 |
| MIMAT0007205 | oan-miR-1400-5p | 1 | _...... | 6 | 85 |
| MIMAT0005429 | cre-miR1170.1 | 8 | _...... | 3 | 85 |
| MIMAT0005209 | ppt-miR1077-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004453 | mdv2-miR-M15-5p | 1 | _...... | 6 | 85 |
| MIMAT0004306 | ath-miR861-3p | 1 | _...... | 6 | 85 |
| MIMAT0012127 | sme-miR-756-3p | 8 | _...... | 3 | 85 |
| MIMAT0003744 | hsv1-miR-H1-5p | 1 | _...... | 6 | 85 |
| MIMAT0003343 | hcmv-miR-UL70-3p | 3 | ......_ | 8 | 85 |
| MIMAT0002815 | hsa-miR-432-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017128 | rno-miR-141-5p | 6 | _...... | 1 | 85 |
