| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggatggat | 8 | ||
| MIMAT0033368 | str-miR-7880n-5p | 2 | _....... | 8 | 87 |
| MIMAT0032923 | ppc-miR-8234-3p | 8 | ......._ | 2 | 87 |
| MIMAT0030157 | bdi-miR7717a-3p | 1 | _....... | 7 | 87 |
| MIMAT0028352 | mml-miR-7196-5p | 7 | ......._ | 1 | 87 |
| MIMAT0028212 | hsa-miR-7151-5p | 8 | _....... | 2 | 87 |
| MIMAT0026404 | sbi-miR6220-5p | 8 | ......._ | 2 | 87 |
| MIMAT0026462 | hhv6b-miR-Ro6-4-5p | 2 | ......._ | 8 | 87 |
| MIMAT0019073 | hsa-miR-4534 | 1 | ......._ | 7 | 87 |
| MIMAT0017652 | aly-miR861-3p | 1 | _....... | 7 | 87 |
| MIMAT0015384 | bmo-miR-3206 | 8 | _....... | 2 | 87 |
| MIMAT0015000 | hsa-miR-3134 | 2 | _....... | 8 | 87 |
| MIMAT0012317 | dps-miR-2527 | 2 | _....... | 8 | 87 |
| MIMAT0004306 | ath-miR861-3p | 1 | _....... | 7 | 87 |
| MIMAT0012127 | sme-miR-756-3p | 8 | _....... | 2 | 87 |
| MIMAT0036400 | gma-miR9763 | 8 | ......g. | 1 | 87 |
| MIMAT0030996 | hsa-miR-8069 | 1 | ......t. | 8 | 87 |
| MIMAT0028197 | dev-miR-D21-3p | 8 | .c...... | 1 | 87 |
| MIMAT0037280 | ame-miR-9876 | 3 | ......__ | 8 | 75 |
| MIMAT0036936 | oha-miR-490-5p | 3 | __...... | 8 | 75 |
| MIMAT0036364 | gma-miR9744 | 2 | __...... | 7 | 75 |
| MIMAT0035424 | nve-miR-9465 | 3 | ......__ | 8 | 75 |
| MIMAT0035326 | gsa-miR-9391-5p | 6 | __...... | 1 | 75 |
| MIMAT0035179 | efu-miR-8915 | 2 | ......__ | 7 | 75 |
| MIMAT0034458 | eca-miR-8930 | 8 | _......_ | 3 | 75 |
| MIMAT0034412 | cfa-miR-8902 | 7 | __...... | 2 | 75 |
| MIMAT0034179 | gra-miR8752 | 2 | _......_ | 7 | 75 |
| MIMAT0034120 | gra-miR8726 | 2 | _......_ | 7 | 75 |
| MIMAT0033951 | atr-miR2950 | 7 | _......_ | 2 | 75 |
| MIMAT0033885 | atr-miR8596 | 3 | __...... | 8 | 75 |
| MIMAT0033883 | atr-miR8594.2 | 2 | __...... | 7 | 75 |
| MIMAT0033716 | pxy-miR-8504 | 6 | ......__ | 1 | 75 |
| MIMAT0033716 | pxy-miR-8504 | 8 | __...... | 3 | 75 |
| MIMAT0033428 | str-miR-8384-5p | 1 | __...... | 6 | 75 |
| MIMAT0032850 | ppc-miR-2235b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032771 | ath-miR8172 | 1 | __...... | 6 | 75 |
| MIMAT0031009 | hsa-miR-8082 | 2 | _......_ | 7 | 75 |
| MIMAT0030972 | stu-miR8048-3p | 2 | _......_ | 7 | 75 |
| MIMAT0030945 | stu-miR8035 | 6 | _......_ | 1 | 75 |
| MIMAT0030930 | stu-miR7980b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030228 | bdi-miR7744-5p | 2 | ......__ | 7 | 75 |
| MIMAT0029663 | cbn-miR-789b | 6 | ......__ | 1 | 75 |
| MIMAT0029594 | cbr-miR-7583c-3p | 6 | ......__ | 1 | 75 |
| MIMAT0029586 | cbr-miR-7583b | 6 | ......__ | 1 | 75 |
| MIMAT0029585 | cbr-miR-7583a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0029309 | mes-miR2950 | 7 | _......_ | 2 | 75 |
| MIMAT0029091 | gga-miR-7468-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028991 | oan-miR-7420-3p | 2 | __...... | 7 | 75 |
| MIMAT0028963 | oan-miR-7408-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028846 | mdo-miR-7386j-5p | 3 | __...... | 8 | 75 |
| MIMAT0028726 | mdo-miR-7357-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028616 | mdo-miR-7309-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028521 | mdo-miR-7273-3p | 8 | __...... | 3 | 75 |
| MIMAT0028507 | mdo-miR-7268-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028446 | mmu-miR-7239-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028311 | mml-miR-7182-3p | 1 | __...... | 6 | 75 |
| MIMAT0028193 | dev-miR-D18-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028093 | mmu-miR-7093-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027944 | mmu-miR-7020-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027919 | mmu-miR-7007-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027712 | mmu-miR-6906-5p | 1 | __...... | 6 | 75 |
| MIMAT0027712 | mmu-miR-6906-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025681 | gga-miR-6589-5p | 2 | _......_ | 7 | 75 |
| MIMAT0025652 | gga-miR-6572-3p | 2 | _......_ | 7 | 75 |
| MIMAT0024567 | bta-miR-1246 | 2 | __...... | 7 | 75 |
| MIMAT0024369 | ppy-miR-1193 | 2 | ......__ | 7 | 75 |
| MIMAT0024256 | ggo-miR-1193 | 2 | ......__ | 7 | 75 |
| MIMAT0024037 | ptr-miR-2392 | 3 | ......__ | 8 | 75 |
| MIMAT0032130 | gma-miR5667-5p | 7 | __...... | 2 | 75 |
| MIMAT0022338 | cin-miR-5605-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021976 | aca-miR-490-5p | 3 | __...... | 8 | 75 |
| MIMAT0021546 | asu-miR-36f-5p | 3 | __...... | 8 | 75 |
| MIMAT0021371 | mtr-miR5298c | 2 | _......_ | 7 | 75 |
| MIMAT0021370 | mtr-miR5298b | 2 | _......_ | 7 | 75 |
| MIMAT0021254 | mtr-miR5256 | 3 | __...... | 8 | 75 |
| MIMAT0020730 | bdi-miR5181a-5p | 8 | __...... | 3 | 75 |
| MIMAT0019580 | pma-miR-4548 | 6 | _......_ | 1 | 75 |
| MIMAT0019269 | oar-miR-1193-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019043 | hsa-miR-2392 | 3 | ......__ | 8 | 75 |
| MIMAT0018595 | ame-miR-3728 | 6 | ......__ | 1 | 75 |
| MIMAT0018009 | vvi-miR2950-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017959 | ssc-miR-490-5p | 3 | __...... | 8 | 75 |
| MIMAT0015909 | ppy-miR-490-5p | 3 | __...... | 8 | 75 |
| MIMAT0017784 | esi-miR3454d-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017770 | esi-miR3454e-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017752 | esi-miR3454c-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017748 | esi-miR3454a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017746 | esi-miR3454g-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017740 | ath-miR774b-3p | 7 | __...... | 2 | 75 |
| MIMAT0017627 | aly-miR842-5p | 3 | _......_ | 8 | 75 |
| MIMAT0015530 | bmo-miR-3343 | 8 | _......_ | 3 | 75 |
| MIMAT0015049 | hsa-miR-1193 | 2 | ......__ | 7 | 75 |
| MIMAT0014949 | mmu-miR-3109-5p | 2 | __...... | 7 | 75 |
| MIMAT0026996 | tgu-miR-490-5p | 3 | __...... | 8 | 75 |
| MIMAT0019185 | rlcv-miR-rL1-17-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017384 | ssc-miR-432-3p | 2 | ......__ | 7 | 75 |
| MIMAT0012944 | eca-miR-490-5p | 3 | __...... | 8 | 75 |
| MIMAT0017356 | rno-miR-490-5p | 3 | __...... | 8 | 75 |
| MIMAT0012732 | mdv2-miR-M32-5p | 8 | _......_ | 3 | 75 |
| MIMAT0011981 | bta-miR-2417 | 2 | _......_ | 7 | 75 |
| MIMAT0011945 | bta-miR-2392 | 1 | __...... | 6 | 75 |
| MIMAT0011945 | bta-miR-2392 | 3 | ......__ | 8 | 75 |
| MIMAT0011625 | crm-miR-2228 | 8 | __...... | 3 | 75 |
| MIMAT0011437 | cel-miR-2211-5p | 8 | _......_ | 3 | 75 |
| MIMAT0011271 | sme-miR-2171 | 3 | _......_ | 8 | 75 |
| MIMAT0010028 | mtr-miR1510b-5p | 3 | __...... | 8 | 75 |
| MIMAT0009442 | mmu-miR-1969 | 3 | _......_ | 8 | 75 |
| MIMAT0007972 | ptr-miR-1246 | 2 | __...... | 7 | 75 |
| MIMAT0007828 | osa-miR1874-3p | 2 | __...... | 7 | 75 |
| MIMAT0007772 | osa-miR1852 | 3 | __...... | 8 | 75 |
| MIMAT0006350 | mml-miR-490-5p | 3 | __...... | 8 | 75 |
| MIMAT0026874 | mml-miR-432-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007635 | gga-miR-1733 | 3 | ......__ | 8 | 75 |
| MIMAT0009175 | oan-miR-1422b-2-5p | 8 | __...... | 3 | 75 |
| MIMAT0007205 | oan-miR-1400-5p | 1 | _......_ | 6 | 75 |
| MIMAT0006891 | oan-miR-1422c-5p | 8 | __...... | 3 | 75 |
| MIMAT0006885 | oan-miR-1422b-1-5p | 7 | __...... | 2 | 75 |
| MIMAT0006810 | oan-miR-490-5p | 3 | __...... | 8 | 75 |
| MIMAT0005913 | hsa-miR-1261 | 1 | __...... | 6 | 75 |
| MIMAT0005898 | hsa-miR-1246 | 2 | __...... | 7 | 75 |
| MIMAT0005429 | cre-miR1170.1 | 8 | _......_ | 3 | 75 |
| MIMAT0005209 | ppt-miR1077-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004453 | mdv2-miR-M15-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017261 | mmu-miR-490-5p | 3 | __...... | 8 | 75 |
| MIMAT0003744 | hsv1-miR-H1-5p | 1 | _......_ | 6 | 75 |
| MIMAT0003916 | ppt-miR1221-5p | 2 | ......__ | 7 | 75 |
| MIMAT0026633 | gga-miR-490-5p | 3 | __...... | 8 | 75 |
| MIMAT0003343 | hcmv-miR-UL70-3p | 3 | ......__ | 8 | 75 |
| MIMAT0002815 | hsa-miR-432-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004764 | hsa-miR-490-5p | 3 | __...... | 8 | 75 |
| MIMAT0017128 | rno-miR-141-5p | 6 | _......_ | 1 | 75 |
