| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggatggg | 7 | ||
| MIMAT0036400 | gma-miR9763 | 8 | ....... | 2 | 100 |
| MIMAT0027919 | mmu-miR-7007-3p | 7 | ....... | 1 | 100 |
| MIMAT0037280 | ame-miR-9876 | 3 | ......_ | 8 | 85 |
| MIMAT0035424 | nve-miR-9465 | 3 | ......_ | 8 | 85 |
| MIMAT0034180 | gra-miR166d | 2 | _...... | 7 | 85 |
| MIMAT0033716 | pxy-miR-8504 | 6 | ......_ | 1 | 85 |
| MIMAT0033366 | str-miR-8371-5p | 2 | _...... | 7 | 85 |
| MIMAT0032923 | ppc-miR-8234-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032850 | ppc-miR-2235b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030996 | hsa-miR-8069 | 1 | ......_ | 6 | 85 |
| MIMAT0030647 | prd-miR-7911a-3p | 1 | _...... | 6 | 85 |
| MIMAT0030407 | ptc-miR7835 | 1 | _...... | 6 | 85 |
| MIMAT0030402 | ptc-miR7821 | 2 | _...... | 7 | 85 |
| MIMAT0029663 | cbn-miR-789b | 6 | ......_ | 1 | 85 |
| MIMAT0029594 | cbr-miR-7583c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029586 | cbr-miR-7583b | 6 | ......_ | 1 | 85 |
| MIMAT0029585 | cbr-miR-7583a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028616 | mdo-miR-7309-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028193 | dev-miR-D18-3p | 6 | ......_ | 1 | 85 |
| MIMAT0026404 | sbi-miR6220-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027944 | mmu-miR-7020-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027712 | mmu-miR-6906-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027669 | hsa-miR-6884-3p | 6 | _...... | 1 | 85 |
| MIMAT0025702 | gga-miR-6608-5p | 2 | _...... | 7 | 85 |
| MIMAT0031174 | ppe-miR482d-5p | 3 | _...... | 8 | 85 |
| MIMAT0024787 | hbr-miR482a | 2 | _...... | 7 | 85 |
| MIMAT0024321 | mml-miR-1262-3p | 2 | _...... | 7 | 85 |
| MIMAT0024037 | ptr-miR-2392 | 3 | ......_ | 8 | 85 |
| MIMAT0022381 | mmu-miR-5626-5p | 8 | _...... | 3 | 85 |
| MIMAT0022338 | cin-miR-5605-3p | 3 | ......_ | 8 | 85 |
| MIMAT0022337 | cin-miR-5605-5p | 7 | _...... | 2 | 85 |
| MIMAT0019073 | hsa-miR-4534 | 1 | ......_ | 6 | 85 |
| MIMAT0019043 | hsa-miR-2392 | 3 | ......_ | 8 | 85 |
| MIMAT0018595 | ame-miR-3728 | 6 | ......_ | 1 | 85 |
| MIMAT0015652 | hsv2-miR-H6-3p | 6 | _...... | 1 | 85 |
| MIMAT0014417 | cqu-miR-279-5p | 1 | _...... | 6 | 85 |
| MIMAT0013796 | bmo-miR-2857 | 2 | _...... | 7 | 85 |
| MIMAT0011945 | bta-miR-2392 | 3 | ......_ | 8 | 85 |
| MIMAT0019181 | tca-miR-279b-5p | 1 | _...... | 6 | 85 |
| MIMAT0019125 | tca-miR-279a-5p | 1 | _...... | 6 | 85 |
| MIMAT0007635 | gga-miR-1733 | 3 | ......_ | 8 | 85 |
| MIMAT0007403 | gga-miR-1550-5p | 2 | _...... | 7 | 85 |
| MIMAT0005209 | ppt-miR1077-3p | 3 | ......_ | 8 | 85 |
| MIMAT0005170 | ppt-miR1053-5p | 1 | _...... | 6 | 85 |
| MIMAT0003343 | hcmv-miR-UL70-3p | 3 | ......_ | 8 | 85 |
| MIMAT0002815 | hsa-miR-432-3p | 3 | ......_ | 8 | 85 |
