| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggcaaac | 7 | ||
| MIMAT0028472 | mdo-miR-7253-5p | 2 | ....... | 8 | 100 |
| MIMAT0018997 | hsa-miR-4470 | 2 | ....... | 8 | 100 |
| MIMAT0017189 | mghv-miR-M1-5-3p | 2 | ....... | 8 | 100 |
| MIMAT0036990 | tae-miR9777 | 2 | _...... | 7 | 85 |
| MIMAT0035738 | rno-miR-3064-3p | 6 | ......_ | 1 | 85 |
| MIMAT0035271 | gsa-miR-96b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0034799 | efu-miR-9209a | 3 | ......_ | 8 | 85 |
| MIMAT0034570 | eca-miR-9028 | 6 | ......_ | 1 | 85 |
| MIMAT0034469 | eca-miR-8940 | 6 | ......_ | 1 | 85 |
| MIMAT0030197 | bdi-miR7731-3p | 8 | _...... | 3 | 85 |
| MIMAT0030179 | bdi-miR7725a-3p | 2 | _...... | 7 | 85 |
| MIMAT0029889 | mmu-miR-216c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029826 | mmu-miR-7660-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028729 | mdo-miR-7358-3p | 8 | _...... | 3 | 85 |
| MIMAT0028023 | mmu-miR-7059-3p | 7 | _...... | 2 | 85 |
| MIMAT0025172 | mmu-miR-6417 | 3 | _...... | 8 | 85 |
| MIMAT0023033 | tur-miR-5728-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022097 | aca-miR-5464-3p | 6 | ......_ | 1 | 85 |
| MIMAT0020473 | bfl-miR-4886 | 6 | ......_ | 1 | 85 |
| MIMAT0020003 | cel-miR-4814-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018800 | tca-miR-3862-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016789 | cin-miR-4178b-5p | 3 | _...... | 8 | 85 |
| MIMAT0016788 | cin-miR-4178a-5p | 2 | _...... | 7 | 85 |
| MIMAT0016716 | cin-miR-4123-3p | 2 | _...... | 7 | 85 |
| MIMAT0016203 | ppy-miR-1282 | 8 | _...... | 3 | 85 |
| MIMAT0016004 | ppy-miR-557 | 6 | _...... | 1 | 85 |
| MIMAT0015581 | bmo-miR-3385-5p | 2 | _...... | 7 | 85 |
| MIMAT0015525 | bmo-miR-3338-5p | 2 | _...... | 7 | 85 |
| MIMAT0015424 | bmo-miR-3242 | 8 | ......_ | 3 | 85 |
| MIMAT0015323 | zma-miR169l-3p | 1 | ......_ | 6 | 85 |
| MIMAT0012889 | eca-miR-1282 | 8 | _...... | 3 | 85 |
| MIMAT0013598 | bmo-miR-316-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012408 | dps-miR-2568b-5p | 1 | _...... | 6 | 85 |
| MIMAT0012404 | dps-miR-2568a-5p | 1 | _...... | 6 | 85 |
| MIMAT0012370 | dps-miR-2507b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0009954 | bta-miR-1282 | 8 | _...... | 3 | 85 |
| MIMAT0009352 | bta-miR-584 | 8 | _...... | 3 | 85 |
| MIMAT0009324 | bta-miR-452 | 7 | _...... | 2 | 85 |
| MIMAT0008238 | ptr-miR-557 | 6 | _...... | 1 | 85 |
| MIMAT0008001 | ptr-miR-1282 | 8 | _...... | 3 | 85 |
| MIMAT0006413 | mml-miR-548d-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026774 | gga-miR-1555-5p | 2 | _...... | 7 | 85 |
| MIMAT0005940 | hsa-miR-1282 | 8 | _...... | 3 | 85 |
| MIMAT0005258 | smo-miR1101-3p | 8 | _...... | 3 | 85 |
| MIMAT0004391 | cre-miR909.2 | 3 | _...... | 8 | 85 |
| MIMAT0003221 | hsa-miR-557 | 6 | _...... | 1 | 85 |
| MIMAT0001637 | mmu-miR-452-5p | 7 | _...... | 2 | 85 |
